XM_002300382.1 (Populus trichocarpa)
TCP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03634 (TCP) IPR005333 POPTR_0001s38480 T344282_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
TCP4
M02501_2.00 		Arabidopsis thaliana
GGGACCAC
GTGGTCCC		 PBM
Weirauch et al.(2014)
pTH8084 		0.954 0.549
TCP4
M02514_2.00 		Arabidopsis lyrata
BKGGGACCAC
GTGGTCCCMV		 PBM
Weirauch et al.(2014)
pTH9313 		0.954 0.549
TCP3
M02500_2.00 		Arabidopsis thaliana
NDGGMCCACN
NGTGGKCCHN		 PBM
Weirauch et al.(2014)
pTH8835 		0.950 0.489
TCP3
M07274_2.00 		Arabidopsis thaliana
DHNGGGACCACH
DGTGGTCCCNDH		 Dap-seq
OMalley et al.(2016)
TCP3_colamp_a 		0.950 0.489
TCP3
M07275_2.00 		Arabidopsis thaliana
DNBGGGACCACHN
NDGTGGTCCCVNH		 Dap-seq
OMalley et al.(2016)
TCP3_col 		0.950 0.489
OS01G0213800
M11398_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$PCF5_01 		0.944 0.466
LjT20A21.20.nc
M02519_2.00 		Lotus japonicus
GGGACCAY
RTGGTCCC		 PBM
Weirauch et al.(2014)
pTH9202 		0.894 0.361
TCP2
M02503_2.00 		Arabidopsis thaliana
NBGGKMCCVN
NBGGKMCCVN		 PBM
Weirauch et al.(2014)
pTH8198 		0.888 0.399
TCP2
M02508_2.00 		Arabidopsis lyrata
GGSMCCAC
GTGGKSCC		 PBM
Weirauch et al.(2014)
pTH9231 		0.886 0.399
PK10344.1
M01313_2.00 		Cannabis sativa
GGGACCAC
GTGGTCCC		 PBM
Lambert et al.(2019)
pTH11464 		0.869 0.353
TCP5
M02510_2.00 		Arabidopsis lyrata
GGGACCAC
GTGGTCCC		 PBM
Weirauch et al.(2014)
pTH9233 		0.852 0.353
TCP13
M07283_2.00 		Arabidopsis thaliana
GTGGGGACCACWD
HWGTGGTCCCCAC		 Dap-seq
OMalley et al.(2016)
PTF1_col_a 		0.841 0.338
TCP13
M07284_2.00 		Arabidopsis thaliana
NNBGGGACCACHN
NDGTGGTCCCVNN		 Dap-seq
OMalley et al.(2016)
PTF1_colamp_a 		0.841 0.338
TCP5
M02505_2.00 		Arabidopsis thaliana
GGGACCAY
RTGGTCCC		 PBM
Weirauch et al.(2014)
pTH7523 		0.840 0.331
For this family, TFs with SR scores > 0.822 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0001s38480.1 TCP 35 170

Links

Other TCP family TFs
Other Populus trichocarpa TFs

419 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSAMEG00000008882 Ailuropoda melanoleuca ENSAMEG00000008882 I
ENSAMXG00000003341 Astyanax mexicanus ENSAMXG00000003341 I
ENSBTAP00000027016-D1 Bos grunniens ENSBTAP00000027016-D1 I
ENSCSAG00000004049 Chlorocebus sabaeus ENSCSAG00000004049 I
ENSGMOG00000007506 Gadus morhua ENSGMOG00000007506 N
ENSLACG00000002751 Latimeria chalumnae ENSLACG00000002751 I
ENSLOCG00000012080 Lepisosteus oculatus ENSLOCG00000012080 I
ENSMEUG00000001334 Macropus eugenii ENSMEUG00000001334 I
ENSMPUG00000009413 Mustela putorius furo ENSMPUG00000009413 I
ENSNLEG00000013325 Nomascus leucogenys ENSNLEG00000013325 I
ENSOANG00000028755 Ornithorhynchus anatinus ENSOANG00000028755 I
ENSOARG00000012718 Ovis aries ENSOARG00000012718 I
ENSP00000226574 Macaca fascicularis ENSP00000226574 I
ENSPANG00000023882 Papio anubis ENSPANG00000023882 I
ENSPFOG00000016918 Poecilia formosa ENSPFOG00000016918 I
ENSPPYG00000014965 Pongo abelii ENSPPYG00000014965 I
ENSSHAG00000007374 Sarcophilus harrisii ENSSHAG00000007374 I
ENSSTOG00000011445 Ictidomys tridecemlineatus ENSSTOG00000011445 I
ENSXMAG00000015369 Xiphophorus maculatus ENSXMAG00000015369 I
Myotis_brandtii_NFKB1_10013135 Myotis brandtii Myotis_brandtii_NFKB1_10013135 I
NFKB1 Ochotona princeps ENSOPRG00000005212 I
NFKB1 Pan troglodytes ENSPTRG00000016320 I
NFKB1 Pteropus vampyrus ENSPVAG00000002722 I
Nfkb1 Rattus norvegicus ENSRNOG00000023258 I
Nfkb1 Mus musculus ENSMUSG00000028163 D
NFKB1 Sus scrofa ENSSSCG00000030957 I
NFKB1 Tupaia belangeri ENSTBEG00000003520 I
NFKB1 Tetraodon nigroviridis ENSTNIG00000002693 N
NFKB1 Tursiops truncatus ENSTTRG00000010852 I
NFKB1 Vicugna pacos ENSVPAG00000000280 I
NFKB1 Oryctolagus cuniculus ENSOCUG00000021712 I
NFKB1 Bos taurus ENSBTAG00000020270 I
NFKB1 Canis familiaris ENSCAFG00000010730 I
NFKB1 Callithrix jacchus ENSCJAG00000015382 I
NFKB1 Cavia porcellus ENSCPOG00000007789 I
nfkb1 Danio rerio ENSDARG00000105261 I
NFKB1 Dasypus novemcinctus ENSDNOG00000006855 I
NFKB1 Felis catus ENSFCAG00000007557 I
NFKB1 Homo sapiens ENSG00000109320 D
NFKB1 Gasterosteus aculeatus ENSGACG00000016876 I
NFKB1 Gallus gallus ENSGALG00000012304 I
NFKB1 Gorilla gorilla ENSGGOG00000009071 I
NFKB1 Loxodonta africana ENSLAFG00000009344 I
NFKB1 Meleagris gallopavo ENSMGAG00000011299 I
NFKB1 Myotis lucifugus ENSMLUG00000005986 I
NFKB1 Macaca mulatta ENSMMUG00000003736 I
NFKB1 Monodelphis domestica ENSMODG00000020672 I
NFKB1 Otolemur garnettii ENSOGAG00000012840 I
Pvit_05196 Pogona vitticeps Pvit_05196 I