Carubv10001730m.g (Capsella rubella)
TCP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03634 (TCP) IPR005333 Carubv10001730m.g T344748_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
TCP17
M07290_2.00 		Arabidopsis thaliana
GTGGGGACCAC
GTGGTCCCCAC		 Dap-seq
OMalley et al.(2016)
TCP17_col_a 		0.963 0.679
TCP17
M07291_2.00 		Arabidopsis thaliana
RTGGGGACCAC
GTGGTCCCCAY		 Dap-seq
OMalley et al.(2016)
TCP17_colamp_a 		0.963 0.679
TCP13
M07283_2.00 		Arabidopsis thaliana
GTGGGGACCACWD
HWGTGGTCCCCAC		 Dap-seq
OMalley et al.(2016)
PTF1_col_a 		0.926 0.482
TCP13
M07284_2.00 		Arabidopsis thaliana
NNBGGGACCACHN
NDGTGGTCCCVNN		 Dap-seq
OMalley et al.(2016)
PTF1_colamp_a 		0.926 0.482
TCP5
M02510_2.00 		Arabidopsis lyrata
GGGACCAC
GTGGTCCC		 PBM
Weirauch et al.(2014)
pTH9233 		0.924 0.554
TCP5
M02505_2.00 		Arabidopsis thaliana
GGGACCAY
RTGGTCCC		 PBM
Weirauch et al.(2014)
pTH7523 		0.922 0.562
PK10344.1
M01313_2.00 		Cannabis sativa
GGGACCAC
GTGGTCCC		 PBM
Lambert et al.(2019)
pTH11464 		0.892 0.473
LjT20A21.20.nc
M02519_2.00 		Lotus japonicus
GGGACCAY
RTGGTCCC		 PBM
Weirauch et al.(2014)
pTH9202 		0.856 0.420
For this family, TFs with SR scores > 0.822 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10001730m TCP 47 213

Links

Other TCP family TFs
Other Capsella rubella TFs

275 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29889.m003269 Ricinus communis 29889.m003269 I 0.000
AMTR_s00057p00042800 Amborella trichopoda AMTR_s00057p00042800 I 0.000
Aquca_003_00568 Aquilegia coerulea Aquca_003_00568 I 0.000
AT3G16940 Arabidopsis thaliana AT3G16940 I 0.000
Bo5g123580 Brassica oleracea Bo5g123580 I 0.000
Bo8g043280 Brassica oleracea Bo8g043280 I 0.000
Bostr.19424s0974 Boechera stricta Bostr.19424s0974 I 0.000
Bostr.30275s0060 Boechera stricta Bostr.30275s0060 I 0.000
Bra022188 Brassica rapa Bra022188 I 0.000
Bra038040 Brassica rapa Bra038040 I 0.000
BRADI1G27170 Brachypodium distachyon BRADI1G27170 I 0.000
Cagra.0053s0009 Capsella grandiflora Cagra.0053s0009 I 0.000
Cagra.4396s0001 Capsella grandiflora Cagra.4396s0001 I 0.000
Carubv10004090m.g Capsella rubella Carubv10004090m.g I 0.000
Carubv10012963m.g Capsella rubella Carubv10012963m.g I 0.000
cassava40488.m1 Manihot esculenta cassava40488.m1 I 0.000
Ca_02997 Cicer arietinum Ca_02997 I 0.000
chr4.CM0429.140.nd Lotus japonicus chr4.CM0429.140.nd I 0.000
Ciclev10004273m.g Citrus clementina Ciclev10004273m.g I 0.000
Cla009415 Citrullus lanatus Cla009415 I 0.000
Cucsa.325250 Cucumis sativus Cucsa.325250 I 0.000
Eucgr.H04035 Eucalyptus grandis Eucgr.H04035 I 0.000
evm.TU.supercontig_929.1 Carica papaya evm.TU.supercontig_929.1 I 0.000
fgenesh1_pg.C_scaffold_7002321 Arabidopsis lyrata fgenesh1_pg.C_scaffold_7002321 I 0.000
fgenesh1_pm.C_scaffold_3001474 Arabidopsis lyrata fgenesh1_pm.C_scaffold_3001474 I 0.000
gene10891-v1.0-hybrid Fragaria vesca gene10891-v1.0-hybrid I 0.000
GLYMA07G37090 Glycine max GLYMA07G37090 I 0.000
GLYMA09G04310 Glycine max GLYMA09G04310 I 0.000
GLYMA15G15350 Glycine max GLYMA15G15350 I 0.000
GLYMA17G03510 Glycine max GLYMA17G03510 I 0.000
Gorai.004G075100 Gossypium raimondii Gorai.004G075100 I 0.000
Gorai.005G065700 Gossypium raimondii Gorai.005G065700 I 0.000
Gorai.006G079000 Gossypium raimondii Gorai.006G079000 I 0.000
Gorai.008G091800 Gossypium raimondii Gorai.008G091800 I 0.000
Gorai.011G198600 Gossypium raimondii Gorai.011G198600 I 0.000
Gorai.012G074000 Gossypium raimondii Gorai.012G074000 I 0.000
Lus10016873.g Linum usitatissimum Lus10016873.g I 0.000
Lus10036455.g Linum usitatissimum Lus10036455.g I 0.000
Lus10037738.g Linum usitatissimum Lus10037738.g I 0.000
Lus10041126.g Linum usitatissimum Lus10041126.g I 0.000
MDP0000164873 Malus domestica MDP0000164873 I 0.000
MDP0000167705 Malus domestica MDP0000167705 I 0.000
MDP0000233860 Malus domestica MDP0000233860 I 0.000
mgf012030m Mimulus guttatus mgf012030m I 0.000
mgf013655m Mimulus guttatus mgf013655m I 0.000
MTR_2g034650 Medicago truncatula MTR_2g034650 I 0.000
MTR_4g121840 Medicago truncatula MTR_4g121840 I 0.000
OB07G20740 Oryza brachyantha OB07G20740 I 0.000
OGLUM07G13800 Oryza glumaepatula OGLUM07G13800 I 0.000
OLONG_014480 Oryza longistaminata OLONG_014480 I 0.000
ONIVA07G13300 Oryza nivara ONIVA07G13300 I 0.000
OPUNC07G13630 Oryza punctata OPUNC07G13630 I 0.000
orange1.1g002476m.g Citrus sinensis orange1.1g002476m.g I 0.000
ORUFI07G15090 Oryza rufipogon ORUFI07G15090 I 0.000
OS07G0490200 Oryza sativa OS07G0490200 I 0.000
PK20811.1 Cannabis sativa PK20811.1 I 0.000
POPTR_0008s10730 Populus trichocarpa POPTR_0008s10730 I 0.000
POPTR_0010s15160 Populus trichocarpa POPTR_0010s15160 I 0.000
PRUPE_ppa001493mg Prunus persica PRUPE_ppa001493mg I 0.000
Q2WEL1_ORYSA Oryza sativa Q2WEL1_ORYSA D 0.000
SapurV1A.0050s0650 Salix purpurea SapurV1A.0050s0650 I 0.000
SapurV1A.0060s0130 Salix purpurea SapurV1A.0060s0130 I 0.000
Si028862m.g Setaria italica Si028862m.g I 0.000
Solyc01g060170.2 Solanum lycopersicum Solyc01g060170.2 I 0.000
Solyc12g099340.1 Solanum lycopersicum Solyc12g099340.1 I 0.000
TCM_021327 Theobroma cacao TCM_021327 I 0.000
Thhalv10020047m.g Eutrema salsugineum Thhalv10020047m.g I 0.000
Thhalv10024342m.g Eutrema salsugineum Thhalv10024342m.g I 0.000
Traes_2AS_4C4190DEB Triticum aestivum Traes_2AS_4C4190DEB I 0.000
VIT_05s0077g01240 Vitis vinifera VIT_05s0077g01240 I 0.000