MDP0000534647 (Malus domestica)
TCP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03634 (TCP) IPR005333 MDP0000534647 T344952_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PK10344.1
M01313_2.00 		Cannabis sativa
GGGACCAC
GTGGTCCC		 PBM
Lambert et al.(2019)
pTH11464 		0.910 0.446
TCP5
M02510_2.00 		Arabidopsis lyrata
GGGACCAC
GTGGTCCC		 PBM
Weirauch et al.(2014)
pTH9233 		0.887 0.420
TCP13
M07283_2.00 		Arabidopsis thaliana
GTGGGGACCACWD
HWGTGGTCCCCAC		 Dap-seq
OMalley et al.(2016)
PTF1_col_a 		0.884 0.420
TCP13
M07284_2.00 		Arabidopsis thaliana
NNBGGGACCACHN
NDGTGGTCCCVNN		 Dap-seq
OMalley et al.(2016)
PTF1_colamp_a 		0.884 0.420
TCP5
M02505_2.00 		Arabidopsis thaliana
GGGACCAY
RTGGTCCC		 PBM
Weirauch et al.(2014)
pTH7523 		0.878 0.411
TCP17
M07290_2.00 		Arabidopsis thaliana
GTGGGGACCAC
GTGGTCCCCAC		 Dap-seq
OMalley et al.(2016)
TCP17_col_a 		0.877 0.420
TCP17
M07291_2.00 		Arabidopsis thaliana
RTGGGGACCAC
GTGGTCCCCAY		 Dap-seq
OMalley et al.(2016)
TCP17_colamp_a 		0.877 0.420
LjT20A21.20.nc
M02519_2.00 		Lotus japonicus
GGGACCAY
RTGGTCCC		 PBM
Weirauch et al.(2014)
pTH9202 		0.822 0.366
For this family, TFs with SR scores > 0.822 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
MDP0000534647 TCP 90 279

Links

Other TCP family TFs
Other Malus domestica TFs

183 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29929.m004641 Ricinus communis 29929.m004641 I 0.000
BGIOSGA020731 Oryza indica BGIOSGA020731 N 0.000
BRADI3G05510 Brachypodium distachyon BRADI3G05510 I 0.000
evm.TU.supercontig_43.66 Carica papaya evm.TU.supercontig_43.66 I 0.000
GRMZM2G065451 Zea mays GRMZM2G065451 N 0.000
GRMZM2G097275 Zea mays GRMZM2G097275 N 0.000
GRMZM2G126827 Zea mays GRMZM2G126827 N 0.000
GRMZM2G156621 Zea mays GRMZM2G156621 N 0.000
GRMZM2G163813 Zea mays GRMZM2G163813 N 0.000
GSMUA_Achr10G02970_001 Musa acuminata GSMUA_Achr10G02970_001 N 0.000
GSMUA_Achr3G05360_001 Musa acuminata GSMUA_Achr3G05360_001 N 0.000
GSMUA_Achr4G12470_001 Musa acuminata GSMUA_Achr4G12470_001 I 0.000
GSMUA_Achr5G22630_001 Musa acuminata GSMUA_Achr5G22630_001 N 0.000
GSMUA_Achr9G23140_001 Musa acuminata GSMUA_Achr9G23140_001 I 0.000
LPERR02G02980 Leersia perrieri LPERR02G02980 N 0.000
LPERR06G19770 Leersia perrieri LPERR06G19770 N 0.000
mgf010397m Mimulus guttatus mgf010397m N 0.000
mgf019346m Mimulus guttatus mgf019346m I 0.000
MLOC_62426 Hordeum vulgare MLOC_62426 N 0.000
OB02G12930 Oryza brachyantha OB02G12930 N 0.000
OBART02G03260 Oryza barthii OBART02G03260 N 0.000
OBART06G23820 Oryza barthii OBART06G23820 N 0.000
OGLUM06G25070 Oryza glumaepatula OGLUM06G25070 N 0.000
OLONG_025693 Oryza longistaminata OLONG_025693 N 0.000
OMERI02G03900 Oryza meridionalis OMERI02G03900 N 0.000
OMERI06G23750 Oryza meridionalis OMERI06G23750 N 0.000
ONIVA02G03070 Oryza nivara ONIVA02G03070 N 0.000
ONIVA06G27990 Oryza nivara ONIVA06G27990 N 0.000
OPUNC02G02570 Oryza punctata OPUNC02G02570 N 0.000
ORGLA02G0030600 Oryza glaberrima ORGLA02G0030600 N 0.000
ORGLA06G0199900 Oryza glaberrima ORGLA06G0199900 N 0.000
ORUFI02G03180 Oryza rufipogon ORUFI02G03180 N 0.000
ORUFI06G25590 Oryza rufipogon ORUFI06G25590 N 0.000
OS02G0139400 Oryza sativa OS02G0139400 N 0.000
Pavir.Ab00499 Panicum virgatum Pavir.Ab00499 N 0.000
Pavir.J20730 Panicum virgatum Pavir.J20730 N 0.000
PGSC0003DMG400026736 Solanum tuberosum PGSC0003DMG400026736 I 0.000
POPTR_0001s13890 Populus trichocarpa POPTR_0001s13890 I 0.000
POPTR_0003s17120 Populus trichocarpa POPTR_0003s17120 I 0.000
SapurV1A.0056s0240 Salix purpurea SapurV1A.0056s0240 I 0.000
SapurV1A.1271s0060 Salix purpurea SapurV1A.1271s0060 I 0.000
Sb04g003175 Sorghum bicolor Sb04g003175 N 0.000
Sb04g004940 Sorghum bicolor Sb04g004940 N 0.000
Si017749m.g Setaria italica Si017749m.g N 0.000
SPL11 Oryza sativa OS06G0663500 N 0.000
SPL3 Oryza indica BGIOSGA007499 N 0.000
Traes_6AS_32A35158A Triticum aestivum Traes_6AS_32A35158A N 0.000
Traes_6DS_C4D93239C Triticum aestivum Traes_6DS_C4D93239C N 0.000
VIT_01s0010g03710 Vitis vinifera VIT_01s0010g03710 I 0.000