chr3.CM0282.560.nc (Lotus japonicus)
TCP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03634 (TCP) IPR005333 chr3.CM0282.560.nc T345118_2.00 Superfamily (2010-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
TCP24
M02499_2.00 		Arabidopsis thaliana
NNNNRVMCVV
BBGKBYNNNN		 PBM
Weirauch et al.(2014)
pTH7337 		0.945 0.254
TCP24
M07272_2.00 		Arabidopsis thaliana
GTGGGGACCAC
GTGGTCCCCAC		 Dap-seq
OMalley et al.(2016)
TCP24_colamp_a 		0.945 0.254
TCP24
M07273_2.00 		Arabidopsis thaliana
NNBGGGACCACH
DGTGGTCCCVNN		 Dap-seq
OMalley et al.(2016)
TCP24_col 		0.945 0.254
TCP24
M02506_2.00 		Arabidopsis lyrata
NBKKNNMMVN
NBKKNNMMVN		 PBM
Weirauch et al.(2014)
pTH9227 		0.941 0.243
For this family, TFs with SR scores > 0.822 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
chr3.CM0282.560.nc TCP 48 199
chr3.CM0282.560.nc TCP 223 341

Links

Other TCP family TFs
Other Lotus japonicus TFs

32 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
BGIOSGA009295 Oryza indica BGIOSGA009295 N
F775_10178 Aegilops tauschii F775_10178 N
MLOC_51817 Hordeum vulgare MLOC_51817 N
OBART02G37310 Oryza barthii OBART02G37310 N
OGLUM02G38450 Oryza glumaepatula OGLUM02G38450 N
OLONG_013731 Oryza longistaminata OLONG_013731 N
OMERI02G35090 Oryza meridionalis OMERI02G35090 N
ONIVA02G40070 Oryza nivara ONIVA02G40070 N
OPUNC02G34470 Oryza punctata OPUNC02G34470 N
ORGLA02G0325300 Oryza glaberrima ORGLA02G0325300 N
ORUFI02G38810 Oryza rufipogon ORUFI02G38810 N
Pavir.Ab03236 Panicum virgatum Pavir.Ab03236 N
Traes_6AL_6E9EB1143 Triticum aestivum Traes_6AL_6E9EB1143 N
Traes_6BL_70715AAF9 Triticum aestivum Traes_6BL_70715AAF9 N
Traes_6DL_917D35DED Triticum aestivum Traes_6DL_917D35DED N
TRIUR3_25071 Triticum urartu TRIUR3_25071 N