CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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MTR_1g086980
(
Medicago truncatula
)
TCR/CxC
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF03638 (TCR)
IPR005172
MTR_1g086980
T345561_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
gw1.20.00.89.1
M02535_2.00
Ostreococcus tauri
WNYWBVWRNW
WNYWBVWRNW
PBM
Weirauch et al.(2014)
pTH9647
0.672
0.225
BGIBMGA008956
M02524_2.00
Bombyx mori
AATTTAAAW
WTTTAAATT
PBM
Weirauch et al.(2014)
pTH9238
0.672
0.200
GE12548
M02529_2.00
Drosophila yakuba
DTTYAAAY
RTTTRAAH
PBM
Weirauch et al.(2014)
pTH9262
0.672
0.200
NEMVEDRAFT_v1g111410
M01320_2.00
Nematostella vectensis
NNNNYRWRN
NYWYRNNNN
PBM
Lambert et al.(2019)
pTH9771
0.672
0.200
SPU_025306
M02531_2.00
Strongylocentrotus purpuratus
NNNNWYRAAH
DTTYRWNNNN
PBM
Weirauch et al.(2014)
pTH9286
0.672
0.200
XP_002124866.1
M01321_2.00
Ciona intestinalis
NDTTYRAAN
NTTYRAAHN
PBM
Lambert et al.(2019)
pTH9835
0.672
0.200
fgenesh1_pg.C_Chr_09.0001000301
M02533_2.00
Ostreococcus tauri
NNNNNRHNN
NNDYNNNNN
PBM
Weirauch et al.(2014)
pTH9457
0.672
0.200
fgeneshCV_pg.C_scaffold_18000164
M02534_2.00
Chlorella vulgaris
NNNNDYRAAH
DTTYRHNNNN
PBM
Weirauch et al.(2014)
pTH9252
0.672
0.200
TCX4
M02521_2.00
Arabidopsis thaliana
DWTTYRAAWH
DWTTYRAAWH
PBM
Weirauch et al.(2014)
pTH7573
0.672
0.197
TCX3
M01087_2.00
Arabidopsis thaliana
NNDTTYAAAH
DTTTRAAHNN
PBM
Sullivan et al.(2014)
pTH7218
0.672
0.197
ENSTSYG00000005291
M02528_2.00
Tarsius syrichta
NNWDHDHWNN
NNWDHDHWNN
PBM
Weirauch et al.(2014)
pTH9366
0.672
0.203
TCX3
M02522_2.00
Arabidopsis thaliana
WTTYAAAH
DTTTRAAW
PBM
Weirauch et al.(2014)
pTH7421
0.672
0.197
PK27683.1
M01322_2.00
Cannabis sativa
NDTTYAAAH
DTTTRAAHN
PBM
Lambert et al.(2019)
pTH11347
0.672
0.203
TCX3
M07297_2.00
Arabidopsis thaliana
DWTTYRAAWTTBAAW
WTTVAAATTYRAAWH
Dap-seq
OMalley et al.(2016)
SOL1_colamp_a
0.672
0.197
AT2G20110
M02520_2.00
Arabidopsis thaliana
DTTTAAAH
DTTTAAAH
PBM
Weirauch et al.(2014)
pTH7914
0.672
0.200
TCX3
M07298_2.00
Arabidopsis thaliana
WTWWAAAATTYAAAW
WTTTRAATTTTWWAW
Dap-seq
OMalley et al.(2016)
SOL1_col
0.672
0.197
TCX5
M02523_2.00
Arabidopsis thaliana
NRTTCAAAYN
NRTTTGAAYN
PBM
Weirauch et al.(2014)
pTH8164
0.672
0.200
lin54
M02526_2.00
Danio rerio
NHTYRAAH
DTTYRADN
PBM
Weirauch et al.(2014)
pTH8399
0.672
0.200
LIN54
M02527_2.00
Gallus gallus
NRTTYAAAH
DTTTRAAYN
PBM
Weirauch et al.(2014)
pTH8566
0.672
0.200
AT2G20110
M07295_2.00
Arabidopsis thaliana
WWHWAADATTYAAAW
WTTTRAATHTTWDWW
Dap-seq
OMalley et al.(2016)
AT2G20110_col_a
0.672
0.200
AT2G20110
M07296_2.00
Arabidopsis thaliana
WWHNAAATTYAAAHN
NDTTTRAATTTNDWW
Dap-seq
OMalley et al.(2016)
AT2G20110_colamp_a
0.672
0.200
TSO1
M07299_2.00
Arabidopsis thaliana
WWWTWDAAATTYAAA
TTTRAATTTHWAWWW
Dap-seq
OMalley et al.(2016)
TSO1_col_a
0.672
0.200
BRADI1G55710
M02525_2.00
Brachypodium distachyon
NVTBYRVABN
NVTBYRVABN
PBM
Weirauch et al.(2014)
pTH9241
0.672
0.197
PK22848.1
M02532_2.00
Cannabis sativa
NNNYNAAATTTNN
NNAAATTTNRNNN
PBM
Weirauch et al.(2014)
pTH9724
0.672
0.197
TCX2
M07300_2.00
Arabidopsis thaliana
WWTYVAAATTYRAAW
WTTYRAATTTBRAWW
Dap-seq
OMalley et al.(2016)
TCX2_col_a
0.672
0.197
TCX2
M07301_2.00
Arabidopsis thaliana
TTYVAAATTYRAAW
WTTYRAATTTBRAA
Dap-seq
OMalley et al.(2016)
TCX2_colamp_a
0.672
0.184
AT5G25790
M01319_2.00
Arabidopsis thaliana
NHYRAAHN
NDTTYRDN
PBM
Lambert et al.(2019)
pTH11533
0.672
0.173
GSPATT00010696001
M02530_2.00
Paramecium tetraurelia
NNBRAAHN
NDTTYVNN
PBM
Weirauch et al.(2014)
pTH8720
0.672
0.187
For this family, TFs with SR scores >
0.660
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
AES61647
TCR/CxC
619
655
FRGCHCAKSQCRSRQCPCFAAGRECDPDVCRNCWVSC
KEH43196
TCR/CxC
599
635
FRGCHCAKSQCRSRQCPCFAAGRECDPDVCRNCWVSC
KEH43197
TCR/CxC
547
583
FRGCHCAKSQCRSRQCPCFAAGRECDPDVCRNCWVSC
KEH43198
TCR/CxC
609
645
FRGCHCAKSQCRSRQCPCFAAGRECDPDVCRNCWVSC
KEH43199
TCR/CxC
419
455
FRGCHCAKSQCRSRQCPCFAAGRECDPDVCRNCWVSC
KEH43200
TCR/CxC
609
645
FRGCHCAKSQCRSRQCPCFAAGRECDPDVCRNCWVSC
KEH43201
TCR/CxC
609
643
FRGCHCAKSQCRSRQCPCFAAGRECDPDVCRNCWV
KEH43202
TCR/CxC
609
645
FRGCHCAKSQCRSRQCPCFAAGRECDPDVCRNCWVSC
KEH43203
TCR/CxC
547
583
FRGCHCAKSQCRSRQCPCFAAGRECDPDVCRNCWVSC
KEH43204
TCR/CxC
568
604
FRGCHCAKSQCRSRQCPCFAAGRECDPDVCRNCWVSC
Links
Other
TCR/CxC
family TFs
Other
Medicago truncatula
TFs
1214 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
AB02848.1
Alternaria brassicicola
AB02848.1
I
ACLA_035940
Aspergillus clavatus
CADACLAG00003762
I
AFUA_3G08010
Aspergillus fumigatus
CADAFUAG00005137
I
ANIA_02919
Aspergillus nidulans
CADANIAG00010168
N
BAUCODRAFT_113280
Baudoinia compniacensis
BAUCODRAFT_113280
I
BBA_00050
Beauveria bassiana
BBA_00050
I
Bcin15g01900
Botrytis cinerea
Bcin15g01900
I
CFIO01_12627
Colletotrichum fioriniae
CFIO01_12627
I
CH063_12017
Colletotrichum higginsianum
CH063_12017
I
CHGG_00776
Chaetomium globosum
CHGG_00776
I
CIMG_02350
Coccidioides immitis
CIMG_02350
I
CMQ_2957
Grosmannia clavigera
CMQ_2957
I
Cob_12302
Colletotrichum orbiculare
Cob_12302
I
COCC4DRAFT_132281
Bipolaris maydis
COCC4DRAFT_132281
I
COCCADRAFT_34587
Bipolaris zeicola
COCCADRAFT_34587
I
COCMIDRAFT_89546
Bipolaris oryzae
COCMIDRAFT_89546
I
COCSADRAFT_161815
Bipolaris sorokiniana
COCSADRAFT_161815
I
COCVIDRAFT_94495
Bipolaris victoriae
COCVIDRAFT_94495
I
CPC735_039930
Coccidioides posadasii
CPC735_039930
I
CSUB01_02419
Colletotrichum sublineola
CSUB01_02419
I
CTHT_0059610
Chaetomium thermophilum
CTHT_0059610
I
DOTSEDRAFT_40082
Dothistroma septosporum
DOTSEDRAFT_40082
I
estExt_fgenesh1_pg.C_chr_11362
Mycosphaerella graminicola
estExt_fgenesh1_pg.C_chr_11362
I
estExt_Genewise1.C_sca_1_chr1_3_00506
Nectria haematococca
estExt_Genewise1.C_sca_1_chr1_3_00506
I
estExt_Genewise1Plus.C_40603
Cryphonectria parasitica
estExt_Genewise1Plus.C_40603
I
EURHEDRAFT_374243
Aspergillus ruber
EURHEDRAFT_374243
I
e_gw1.7.723.1
Neurospora discreta
e_gw1.7.723.1
I
F503_00580
Ophiostoma piceae uamh
F503_00580
I
FFUJ_01127
Fusarium fujikuroi
FFUJ_01127
I
fgenesh1_pg.C_scaffold_1001214
Mycosphaerella fijiensis
fgenesh1_pg.C_scaffold_1001214
I
fgenesh1_pg.C_scaffold_3000316
Cochliobolus heterostrophus C5
fgenesh1_pg.C_scaffold_3000316
I
FGRRES_15757
Fusarium graminearum
FGRRES_15757
I
FOXG_00444
Fusarium oxysporum
FOXG_00444
I
FPSE_04598
Fusarium pseudograminearum
FPSE_04598
I
FVEG_01067
Fusarium verticillioides
FVEG_01067
I
GGTG_10245
Gaeumannomyces graminis
GGTG_10245
I
GLRG_04524
Colletotrichum graminicola
GLRG_04524
I
HCBG_06660
Histoplasma capsulatum
HCBG_06660
I
HMPREF1624_01125
Sporothrix schenckii
HMPREF1624_01125
I
LEMA_P025640.1
Leptosphaeria maculans
LEMA_P025640.1
I
M7I_4857
Glarea lozoyensis
M7I_4857
I
MAC_03065
Metarhizium acridum
MAC_03065
I
MAJ_00678
Metarhizium majus
MAJ_00678
I
MANI_112562
Metarhizium anisopliae
MANI_112562
I
MAPG_03212
Magnaporthe poae
MAPG_03212
I
MBM_02240
Marssonina brunnea
MBM_02240
I
MBR_03431
Metarhizium brunneum
MBR_03431
I
MGG_04428
Magnaporthe oryzae
MGG_04428
I
MGU_02765
Metarhizium guizhouense
MGU_02765
I
MYCFIDRAFT_213472
Pseudocercospora fijiensis
MYCFIDRAFT_213472
I
Mycgr3G107598
Zymoseptoria tritici
Mycgr3G107598
I
NCU09333
Neurospora crassa
NCU09333
D
NechaG57385
Fusarium solani
NechaG57385
I
NEUTE1DRAFT_105772
Neurospora tetrasperma
NEUTE1DRAFT_105772
I
NFIA_069130
Neosartorya fischeri
CADNFIAG00006258
I
OCS_03657
Ophiocordyceps sinensis
OCS_03657
I
OIDMADRAFT_127716
Oidiodendron maius
OIDMADRAFT_127716
I
PAAG_01715
Paracoccidioides sp lutzii
PAAG_01715
I
PABG_03764
Paracoccidioides brasiliensis
PABG_03764
I
PEX1_057980
Penicillium expansum
PEX1_057980
I
PFICI_01390
Pestalotiopsis fici
PFICI_01390
I
PTRG_07931
Pyrenophora triticirepentis
PTRG_07931
I
PTT_11966
Pyrenophora teres
PTT_11966
I
PVAR5_5909
Byssochlamys spectabilis
PVAR5_5909
I
S40285_03272
Stachybotrys chlorohalonata
S40285_03272
I
S40288_01364
Stachybotrys chartarum
S40288_01364
I
SAPIO_CDS8963
Scedosporium apiospermum
SAPIO_CDS8963
I
SBOR_5885
Sclerotinia borealis
SBOR_5885
I
SEPMUDRAFT_146274
Sphaerulina musiva
SEPMUDRAFT_146274
I
SETTUDRAFT_160143
Setosphaeria turcica
SETTUDRAFT_160143
I
SMAC_08482
Sordaria macrospora
SMAC_08482
I
SNOG_15249
Stagonospora nodorum
SNOG_15249
I
SNOG_15249
Phaeosphaeria nodorum
SNOG_15249
I
SPBR_08152
Sporothrix brasiliensis
SPBR_08152
I
THITE_2113340
Thielavia terrestris
THITE_2113340
I
TRIATDRAFT_83090
Trichoderma atroviride
TRIATDRAFT_83090
I
TRIREDRAFT_75418
Trichoderma reesei
TRIREDRAFT_75418
I
TRIVIDRAFT_88565
Trichoderma virens
TRIVIDRAFT_88565
I
UCREL1_1716
Eutypa lata
UCREL1_1716
I
UCRNP2_5297
Neofusicoccum parvum
UCRNP2_5297
I
UCRPA7_7219
Togninia minima
UCRPA7_7219
I
VDAG_03150
Verticillium dahliae
VDAG_03150
I
VDBG_05992
Verticillium alfalfae
VDBG_05992
I
VDBG_05992
Verticillium albo atrum
VDBG_05992
I
VHEMI03893
Torrubiella hemipterigena
VHEMI03893
I