CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

Solyc05g015850.2 *(Solanum lycopersicum)* WRKY
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source	Animal TF db
PF03106 (WRKY)	IPR003657	Solyc05g015850.2	T354777_2.00	Ensembl (2018-Dec-8)	Link out
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
WRKY75 M02562_2.00	Arabidopsis thaliana	NRGTCAAM	KTTGACYN	PBM Weirauch et al.(2014) pTH8821	0.873	0.897
WRKY75 M07420_2.00	Arabidopsis thaliana	NAAAGTCAACGNH	DNCGTTGACTTTN	Dap-seq OMalley et al.(2016) WRKY75_col_a	0.873	0.897
WRKY75 M07421_2.00	Arabidopsis thaliana	VAAAGTCAACRNH	DNYGTTGACTTTB	Dap-seq OMalley et al.(2016) WRKY75_colamp_a	0.873	0.897
WRKY45 M00899_2.00	Arabidopsis thaliana	NNRGTCAAMGN	NCKTTGACYNN	PBM Franco-Zorrilla et al.(2014) WRKY45	0.845	0.776
WRKY45 M07397_2.00	Arabidopsis thaliana	NAAAAGTCAAMD	HKTTGACTTTTN	Dap-seq OMalley et al.(2016) WRKY45_col_a	0.845	0.776
WRKY45 M07398_2.00	Arabidopsis thaliana	MAAAGTCAAMV	BKTTGACTTTK	Dap-seq OMalley et al.(2016) WRKY45_colamp_a	0.845	0.776
WRKY24 M07426_2.00	Arabidopsis thaliana	NNNAWAGTCAACGN	NCGTTGACTWTNNN	Dap-seq OMalley et al.(2016) WRKY24_col_a	0.844	0.793
WRKY24 M07427_2.00	Arabidopsis thaliana	NAWAGTCAACGNH	DNCGTTGACTWTN	Dap-seq OMalley et al.(2016) WRKY24_colamp_a	0.844	0.793
WRKY43 M02555_2.00	Arabidopsis thaliana	NRGTCAAHNN	NNDTTGACYN	PBM Weirauch et al.(2014) pTH7373	0.838	0.759
WRKY43 M07393_2.00	Arabidopsis thaliana	NNAAAGTCAACGNN	NNCGTTGACTTTNN	Dap-seq OMalley et al.(2016) WRKY43_col_a	0.838	0.759
WRKY43 M07394_2.00	Arabidopsis thaliana	NNNNAAAGTCAACGN	NCGTTGACTTTNNNN	Dap-seq OMalley et al.(2016) WRKY43_colamp_a	0.838	0.759
WRKY48 M02565_2.00	Arabidopsis thaliana	NNVGTCADNN	NNHTGACBNN	PBM Weirauch et al.(2014) pTH7552	0.835	0.724
WRKY28 M07406_2.00	Arabidopsis thaliana	HAAAGTCAAMNNH	DNNKTTGACTTTD	Dap-seq OMalley et al.(2016) WRKY28_col_a	0.832	0.724
WRKY28 M07407_2.00	Arabidopsis thaliana	VAAAGTCAAMG	CKTTGACTTTB	Dap-seq OMalley et al.(2016) WRKY28_colamp_a	0.832	0.724
WRKY8 M02564_2.00	Arabidopsis thaliana	NRGTCAAHN	NDTTGACYN	PBM Weirauch et al.(2014) pTH7554	0.832	0.707
WRKY8 M07428_2.00	Arabidopsis thaliana	NAAAAGTCAACRNHW	WDNYGTTGACTTTTN	Dap-seq OMalley et al.(2016) WRKY8_colamp_a	0.832	0.707
WRKY8 M07429_2.00	Arabidopsis thaliana	NNVAAAGTCAACRNH	DNYGTTGACTTTBNN	Dap-seq OMalley et al.(2016) WRKY8_col	0.832	0.707
WRKY71 M07374_2.00	Arabidopsis thaliana	HAAAGTCAAMN	NKTTGACTTTD	Dap-seq OMalley et al.(2016) WRKY71_col_a	0.832	0.707
WRKY57 M02547_2.00	Arabidopsis thaliana	NNRGTCAAHN	NDTTGACYNN	PBM Weirauch et al.(2014) pTH7917	0.831	0.690
WRKY23 M02556_2.00	Arabidopsis thaliana	RGTCAACG	CGTTGACY	PBM Weirauch et al.(2014) pTH7387	0.827	0.707
WRKY23 M01089_2.00	Arabidopsis thaliana	NRGTCAAM	KTTGACYN	PBM Sullivan et al.(2014) pTH7671	0.827	0.707
WRKY12 M00898_2.00	Arabidopsis thaliana	NHGGTCAACNN	NNGTTGACCDN	PBM Franco-Zorrilla et al.(2014) WRKY12	0.827	0.690
ZAP1 M00982_2.00	Arabidopsis thaliana	NRGTCAAN	NTTGACYN	PBM Lindemose et al.(2014) WRKY1	0.817	0.621
WRKY21 M02553_2.00	Arabidopsis thaliana	NNRGTCAAMN	NKTTGACYNN	PBM Weirauch et al.(2014) pTH7422	0.809	0.466
WRKY21 M07389_2.00	Arabidopsis thaliana	HAAAGTCAACNNH	DNNGTTGACTTTD	Dap-seq OMalley et al.(2016) WRKY21_colamp_a	0.809	0.466
WRKY21 M07390_2.00	Arabidopsis thaliana	HAAAGTCAACK	MGTTGACTTTD	Dap-seq OMalley et al.(2016) WRKY21_col	0.809	0.466
For this family, TFs with SR scores > 0.808* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
Solyc05g015850.2.1	WRKY	94	151	DDGYRWRKYGQKAVKNNKFPRSYYRCTHQGCNVKKQVQRLSKDEEVVVTTYEGMHSHP

Links
Other WRKY family TFs
Other *Solanum lycopersicum* TFs

973 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action
30204.m001803	Ricinus communis	30204.m001803	N	0.000
ABI3	Arabidopsis thaliana	AT3G24650	N	0.000
ABI3	Vitis vinifera	VIT_07s0005g05400	N	0.000
ABI3	Arabidopsis lyrata	fgenesh1_pg.C_scaffold_3002399	N	0.000
AMTR_s00049p00034730	Amborella trichopoda	AMTR_s00049p00034730	N	0.000
Aquca_108_00003	Aquilegia coerulea	Aquca_108_00003	N	0.000
Bo3g083650	Brassica oleracea	Bo3g083650	N	0.000
Bostr.19424s0154	Boechera stricta	Bostr.19424s0154	N	0.000
Bra013248	Brassica rapa	Bra013248	N	0.000
BRADI2G58390	Brachypodium distachyon	BRADI2G58390	N	0.000
Cagra.2774s0002	Capsella grandiflora	Cagra.2774s0002	N	0.000
Carubv10016094m.g	Capsella rubella	Carubv10016094m.g	N	0.000
cassava2971.m1	Manihot esculenta	cassava2971.m1	N	0.000
cassava34238.m1	Manihot esculenta	cassava34238.m1	N	0.000
Ca_21518	Cicer arietinum	Ca_21518	N	0.000
chr1.CM0147.220.nd	Lotus japonicus	chr1.CM0147.220.nd	N	0.000
Ciclev10019039m.g	Citrus clementina	Ciclev10019039m.g	N	0.000
Cla015213	Citrullus lanatus	Cla015213	N	0.000
Cucsa.078480	Cucumis sativus	Cucsa.078480	N	0.000
evm.TU.supercontig_8.187	Carica papaya	evm.TU.supercontig_8.187	N	0.000
F775_43744	Aegilops tauschii	F775_43744	N	0.000
gene17562-v1.0-hybrid	Fragaria vesca	gene17562-v1.0-hybrid	N	0.000
GLYMA08G47240	Glycine max	GLYMA08G47240	N	0.000
GLYMA18G38490	Glycine max	GLYMA18G38490	N	0.000
Gorai.001G184300	Gossypium raimondii	Gorai.001G184300	N	0.000
GRMZM2G133398	Zea mays	GRMZM2G133398	N	0.000
GSMUA_Achr7G23040_001	Musa acuminata	GSMUA_Achr7G23040_001	N	0.000
GSMUA_AchrUn_randomG18520_001	Musa acuminata	GSMUA_AchrUn_randomG18520_001	N	0.000
LPERR01G35880	Leersia perrieri	LPERR01G35880	N	0.000
Lus10011888.g	Linum usitatissimum	Lus10011888.g	N	0.000
Lus10022820.g	Linum usitatissimum	Lus10022820.g	N	0.000
MDP0000309680	Malus domestica	MDP0000309680	N	0.000
mgf023017m	Mimulus guttatus	mgf023017m	N	0.000
MLOC_69727	Hordeum vulgare	MLOC_69727	N	0.000
MTR_7g059330	Medicago truncatula	MTR_7g059330	N	0.000
OB01G50120	Oryza brachyantha	OB01G50120	N	0.000
OBART01G41410	Oryza barthii	OBART01G41410	N	0.000
OGLUM01G45580	Oryza glumaepatula	OGLUM01G45580	N	0.000
OLONG_001180	Oryza longistaminata	OLONG_001180	N	0.000
OMERI01G38380	Oryza meridionalis	OMERI01G38380	N	0.000
ONIVA01G46510	Oryza nivara	ONIVA01G46510	N	0.000
orange1.1g038867m.g	Citrus sinensis	orange1.1g038867m.g	N	0.000
ORGLA01G0353400	Oryza glaberrima	ORGLA01G0353400	N	0.000
ORUFI01G44750	Oryza rufipogon	ORUFI01G44750	N	0.000
Pavir.Ea03476	Panicum virgatum	Pavir.Ea03476	N	0.000
Pavir.J03563	Panicum virgatum	Pavir.J03563	N	0.000
PDK_20s1318001g001	Phoenix dactylifera	PDK_20s1318001g001	N	0.000
PGSC0003DMG400020088	Solanum tuberosum	PGSC0003DMG400020088	N	0.000
PGSC0003DMG400020155	Solanum tuberosum	PGSC0003DMG400020155	N	0.000
Pm020417	Prunus mume	Pm020417	N	0.000
POPTR_0002s25330	Populus trichocarpa	POPTR_0002s25330	N	0.000
PRUPE_ppa001608mg	Prunus persica	PRUPE_ppa001608mg	N	0.000
SapurV1A.0937s0080	Salix purpurea	SapurV1A.0937s0080	N	0.000
Sb03g043480	Sorghum bicolor	Sb03g043480	N	0.000
Si000497m.g	Setaria italica	Si000497m.g	N	0.000
Solyc06g083590.2	Solanum lycopersicum	Solyc06g083590.2	N	0.000
Solyc06g083600.1	Solanum lycopersicum	Solyc06g083600.1	N	0.000
TCM_003056	Theobroma cacao	TCM_003056	N	0.000
Thhalv10003110m.g	Eutrema salsugineum	Thhalv10003110m.g	N	0.000
TRAES3BF066400010CFD_g	Triticum aestivum	TRAES3BF066400010CFD_g	N	0.000
VP1	Oryza sativa	OS01G0911700	N	0.000

Solyc05g015850.2 (Solanum lycopersicum) WRKY

TF Information

Directly determined binding motifs

Motifs from related TFs

DNA Binding Domains

Links

973 Related TFs

Solyc05g015850.2 **(Solanum lycopersicum)
WRKY**