CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

Cla019157 *(Citrullus lanatus)* WRKY
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source
PF03106 (WRKY)	IPR003657	Cla019157	T355314_2.00	GigaDB (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
WRKY65 M07372_2.00	Arabidopsis thaliana	NWWAGTCAACG	CGTTGACTWWN	Dap-seq OMalley et al.(2016) WRKY65_col_a	0.877	0.780
WRKY65 M07373_2.00	Arabidopsis thaliana	NAAAGTCAACGN	NCGTTGACTTTN	Dap-seq OMalley et al.(2016) WRKY65_colamp_a	0.877	0.780
WRKY21 M02553_2.00	Arabidopsis thaliana	NNRGTCAAMN	NKTTGACYNN	PBM Weirauch et al.(2014) pTH7422	0.873	0.729
WRKY21 M07389_2.00	Arabidopsis thaliana	HAAAGTCAACNNH	DNNGTTGACTTTD	Dap-seq OMalley et al.(2016) WRKY21_colamp_a	0.873	0.729
WRKY21 M07390_2.00	Arabidopsis thaliana	HAAAGTCAACK	MGTTGACTTTD	Dap-seq OMalley et al.(2016) WRKY21_col	0.873	0.729
WRKY22 M02557_2.00	Arabidopsis thaliana	NNNKTMHDNN	NNHDKAMNNN	PBM Weirauch et al.(2014) pTH7320	0.871	0.746
WRKY22 M07400_2.00	Arabidopsis thaliana	AAAAGTCAACKNH	DNMGTTGACTTTT	Dap-seq OMalley et al.(2016) WRKY22_colamp_a	0.871	0.746
WRKY22 M07401_2.00	Arabidopsis thaliana	NAAAGTCAACKNH	DNMGTTGACTTTN	Dap-seq OMalley et al.(2016) WRKY22_col	0.871	0.746
WRKY11 M02559_2.00	Arabidopsis thaliana	NDGTCAAHNN	NNDTTGACHN	PBM Weirauch et al.(2014) pTH8091	0.868	0.797
WRKY11 M07415_2.00	Arabidopsis thaliana	NHAAAGTCAACBNH	DNVGTTGACTTTDN	Dap-seq OMalley et al.(2016) WRKY11_col_a	0.868	0.797
WRKY11 M11464_2.00	Arabidopsis thaliana	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$WRKY11_Q2	0.868	0.797
WRKY17 M02550_2.00	Arabidopsis thaliana	NNDGTCAAHN	NDTTGACHNN	PBM Weirauch et al.(2014) pTH8088	0.868	0.797
WRKY17 M07385_2.00	Arabidopsis thaliana	NHAAAGTCAACRNN	NNYGTTGACTTTDN	Dap-seq OMalley et al.(2016) WRKY17_col_a	0.868	0.797
WRKY17 M07386_2.00	Arabidopsis thaliana	NMAAAGTCAACGN	NCGTTGACTTTKN	Dap-seq OMalley et al.(2016) WRKY17_colamp_a	0.868	0.797
WRKY15 M02549_2.00	Arabidopsis thaliana	NRGTCAAMNN	NNKTTGACYN	PBM Weirauch et al.(2014) pTH7602	0.867	0.763
WRKY15 M07383_2.00	Arabidopsis thaliana	AAAAGTCAACKN	NMGTTGACTTTT	Dap-seq OMalley et al.(2016) WRKY15_colamp_a	0.867	0.763
WRKY15 M07384_2.00	Arabidopsis thaliana	NWAAGTCAACB	VGTTGACTTWN	Dap-seq OMalley et al.(2016) WRKY15_col_b	0.867	0.763
WRKY14 M00731_2.00	Arabidopsis thaliana	NRGTCAAMNN	NNKTTGACYN	PBM Chang et al.(2013) pTH7570	0.867	0.712
WRKY14 M07375_2.00	Arabidopsis thaliana	NAAAGTCAACGNN	NNCGTTGACTTTN	Dap-seq OMalley et al.(2016) WRKY14_col_a	0.867	0.712
WRKY14 M07376_2.00	Arabidopsis thaliana	NAAAGTCAACGNH	DNCGTTGACTTTN	Dap-seq OMalley et al.(2016) WRKY14_colamp_a	0.867	0.712
WRKY27 M02566_2.00	Arabidopsis thaliana	NNGTCHDNN	NNHDGACNN	PBM Weirauch et al.(2014) pTH8188	0.867	0.695
WRKY27 M07430_2.00	Arabidopsis thaliana	MAAAGTCAACKNH	DNMGTTGACTTTK	Dap-seq OMalley et al.(2016) WRKY27_col_a	0.867	0.695
WRKY27 M07431_2.00	Arabidopsis thaliana	HAAAGTCAACKNH	DNMGTTGACTTTD	Dap-seq OMalley et al.(2016) WRKY27_colamp_a	0.867	0.695
Q40828_PETCR M11467_2.00	Petroselinum crispum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$WRKY_Q2	0.866	0.763
WRKY7 M07412_2.00	Arabidopsis thaliana	NNDDDNNNNMAAAGTCAACGV	BCGTTGACTTTKNNNNHHHNN	Dap-seq OMalley et al.(2016) WRKY7_colamp_a	0.863	0.780
WRKY7 M07413_2.00	Arabidopsis thaliana	NAAAAGTCAACKNN	NNMGTTGACTTTTN	Dap-seq OMalley et al.(2016) WRKY7_col	0.863	0.780
WRKY29 M02558_2.00	Arabidopsis thaliana	NNNGTCHDNN	NNHDGACNNN	PBM Weirauch et al.(2014) pTH9604	0.848	0.627
WRKY29 M07410_2.00	Arabidopsis thaliana	HAAAGTCAACK	MGTTGACTTTD	Dap-seq OMalley et al.(2016) WRKY29_col_a	0.848	0.627
WRKY29 M07411_2.00	Arabidopsis thaliana	HWWAGTCAAMDNN	NNHKTTGACTWWD	Dap-seq OMalley et al.(2016) WRKY29_colamp_a	0.848	0.627
WRKY48 M02565_2.00	Arabidopsis thaliana	NNVGTCADNN	NNHTGACBNN	PBM Weirauch et al.(2014) pTH7552	0.840	0.610
WRKY28 M07406_2.00	Arabidopsis thaliana	HAAAGTCAAMNNH	DNNKTTGACTTTD	Dap-seq OMalley et al.(2016) WRKY28_col_a	0.840	0.576
WRKY28 M07407_2.00	Arabidopsis thaliana	VAAAGTCAAMG	CKTTGACTTTB	Dap-seq OMalley et al.(2016) WRKY28_colamp_a	0.840	0.576
WRKY8 M02564_2.00	Arabidopsis thaliana	NRGTCAAHN	NDTTGACYN	PBM Weirauch et al.(2014) pTH7554	0.840	0.559
WRKY8 M07428_2.00	Arabidopsis thaliana	NAAAAGTCAACRNHW	WDNYGTTGACTTTTN	Dap-seq OMalley et al.(2016) WRKY8_colamp_a	0.840	0.559
WRKY8 M07429_2.00	Arabidopsis thaliana	NNVAAAGTCAACRNH	DNYGTTGACTTTBNN	Dap-seq OMalley et al.(2016) WRKY8_col	0.840	0.559
WRKY71 M07374_2.00	Arabidopsis thaliana	HAAAGTCAAMN	NKTTGACTTTD	Dap-seq OMalley et al.(2016) WRKY71_col_a	0.836	0.559
ZAP1 M00982_2.00	Arabidopsis thaliana	NRGTCAAN	NTTGACYN	PBM Lindemose et al.(2014) WRKY1	0.824	0.593
WRKY23 M02556_2.00	Arabidopsis thaliana	RGTCAACG	CGTTGACY	PBM Weirauch et al.(2014) pTH7387	0.822	0.525
WRKY23 M01089_2.00	Arabidopsis thaliana	NRGTCAAM	KTTGACYN	PBM Sullivan et al.(2014) pTH7671	0.822	0.525
fgenesh1_pg.C_Chr_11.0001000193 M02570_2.00	Ostreococcus tauri	NRGTCARNN	NNYTGACYN	PBM Weirauch et al.(2014) pTH9432	0.821	0.610
WRKY57 M02547_2.00	Arabidopsis thaliana	NNRGTCAAHN	NDTTGACYNN	PBM Weirauch et al.(2014) pTH7917	0.819	0.525
WRKY59 M07382_2.00	Arabidopsis thaliana	NDWWAGTCAAMN	NKTTGACTWWHN	Dap-seq OMalley et al.(2016) WRKY59_col_a	0.815	0.525
For this family, TFs with SR scores > 0.808* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
Cla019157	WRKY	204	262	SDEYSWRKYGQKPIKGSPYPRGYYRCSTVKGCPARKKVERARDDPTMLLVTYDGDHRHP

Links
Other WRKY family TFs
Other *Citrullus lanatus* TFs

1674 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action
BGIOSGA034713	Oryza indica	BGIOSGA034713	I	0.000
BGIOSGA036918	Oryza indica	BGIOSGA036918	I	0.000
Ca_18090	Cicer arietinum	Ca_18090	I	0.000
chr1.CM0104.240.nc	Lotus japonicus	chr1.CM0104.240.nc	I	0.000
chr2.CM0641.320.nc	Lotus japonicus	chr2.CM0641.320.nc	I	0.000
e_gw1.15.275.1	Physcomitrella patens	e_gw1.15.275.1	I	0.000
e_gw1.259.28.1	Physcomitrella patens	e_gw1.259.28.1	I	0.000
F775_26965	Aegilops tauschii	F775_26965	I	0.000
Gorai.008G179900	Gossypium raimondii	Gorai.008G179900	I	0.000
GRMZM2G109627	Zea mays	GRMZM2G109627	I	0.000
GRMZM2G127379	Zea mays	GRMZM2G127379	I	0.000
GRMZM2G312201	Zea mays	GRMZM2G312201	N	0.000
GRMZM2G430849	Zea mays	GRMZM2G430849	I	0.000
GSMUA_Achr3G18010_001	Musa acuminata	GSMUA_Achr3G18010_001	I	0.000
GSMUA_Achr6G32320_001	Musa acuminata	GSMUA_Achr6G32320_001	I	0.000
GSMUA_Achr7G21770_001	Musa acuminata	GSMUA_Achr7G21770_001	I	0.000
GSMUA_AchrUn_randomG17360_001	Musa acuminata	GSMUA_AchrUn_randomG17360_001	I	0.000
LPERR11G01300	Leersia perrieri	LPERR11G01300	I	0.000
LPERR12G01440	Leersia perrieri	LPERR12G01440	I	0.000
Lus10026617.g	Linum usitatissimum	Lus10026617.g	I	0.000
Lus10030446.g	Linum usitatissimum	Lus10030446.g	I	0.000
MDP0000481448	Malus domestica	MDP0000481448	I	0.000
mgf022118m	Mimulus guttatus	mgf022118m	I	0.000
MLOC_4747	Hordeum vulgare	MLOC_4747	I	0.000
MTR_5g041940	Medicago truncatula	MTR_5g041940	I	0.000
OB11G11210	Oryza brachyantha	OB11G11210	I	0.000
OB12G11500	Oryza brachyantha	OB12G11500	I	0.000
OBART11G01590	Oryza barthii	OBART11G01590	I	0.000
OBART12G01290	Oryza barthii	OBART12G01290	I	0.000
OGLUM11G01310	Oryza glumaepatula	OGLUM11G01310	I	0.000
OGLUM12G01870	Oryza glumaepatula	OGLUM12G01870	I	0.000
OLONG_020632	Oryza longistaminata	OLONG_020632	I	0.000
OLONG_026749	Oryza longistaminata	OLONG_026749	I	0.000
OMERI12G00480	Oryza meridionalis	OMERI12G00480	I	0.000
ONIVA11G01630	Oryza nivara	ONIVA11G01630	I	0.000
OPUNC11G01330	Oryza punctata	OPUNC11G01330	I	0.000
OPUNC12G01370	Oryza punctata	OPUNC12G01370	I	0.000
ORGLA12G0011400	Oryza glaberrima	ORGLA12G0011400	I	0.000
ORUFI12G01570	Oryza rufipogon	ORUFI12G01570	I	0.000
OS11G0126900	Oryza sativa	OS11G0126900	I	0.000
OS12G0123700	Oryza sativa	OS12G0123700	I	0.000
Pavir.Bb03737	Panicum virgatum	Pavir.Bb03737	I	0.000
Pavir.Ea00837	Panicum virgatum	Pavir.Ea00837	I	0.000
Pavir.J23256	Panicum virgatum	Pavir.J23256	I	0.000
Pavir.J23516	Panicum virgatum	Pavir.J23516	I	0.000
PK25119.1	Cannabis sativa	PK25119.1	I	0.000
POPTR_0005s20240	Populus trichocarpa	POPTR_0005s20240	I	0.000
Sb05g001580	Sorghum bicolor	Sb05g001580	I	0.000
Sb08g001940	Sorghum bicolor	Sb08g001940	I	0.000
SELMODRAFT_133982	Selaginella moellendorffii	SELMODRAFT_133982	I	0.000
SELMODRAFT_47266	Selaginella moellendorffii	SELMODRAFT_47266	I	0.000
Si010410m.g	Setaria italica	Si010410m.g	I	0.000
Si026530m.g	Setaria italica	Si026530m.g	I	0.000
Si030267m.g	Setaria italica	Si030267m.g	I	0.000
Traes_5BL_CC18CAD72	Triticum aestivum	Traes_5BL_CC18CAD72	D	0.000

Cla019157 (Citrullus lanatus) WRKY

TF Information

Directly determined binding motifs

Motifs from related TFs

DNA Binding Domains

Links

1674 Related TFs

Cla019157 **(Citrullus lanatus)
WRKY**