CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

chr4.CM0244.470.nc *(Lotus japonicus)* WRKY
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source
PF03106 (WRKY)	IPR003657	chr4.CM0244.470.nc	T357124_2.00	Superfamily (2010-Oct-26)
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
Q40828_PETCR M11467_2.00	Petroselinum crispum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$WRKY_Q2	0.873	0.847
WRKY65 M07372_2.00	Arabidopsis thaliana	NWWAGTCAACG	CGTTGACTWWN	Dap-seq OMalley et al.(2016) WRKY65_col_a	0.868	0.712
WRKY65 M07373_2.00	Arabidopsis thaliana	NAAAGTCAACGN	NCGTTGACTTTN	Dap-seq OMalley et al.(2016) WRKY65_colamp_a	0.868	0.712
WRKY27 M02566_2.00	Arabidopsis thaliana	NNGTCHDNN	NNHDGACNN	PBM Weirauch et al.(2014) pTH8188	0.868	0.712
WRKY27 M07430_2.00	Arabidopsis thaliana	MAAAGTCAACKNH	DNMGTTGACTTTK	Dap-seq OMalley et al.(2016) WRKY27_col_a	0.868	0.712
WRKY27 M07431_2.00	Arabidopsis thaliana	HAAAGTCAACKNH	DNMGTTGACTTTD	Dap-seq OMalley et al.(2016) WRKY27_colamp_a	0.868	0.712
WRKY14 M00731_2.00	Arabidopsis thaliana	NRGTCAAMNN	NNKTTGACYN	PBM Chang et al.(2013) pTH7570	0.868	0.695
WRKY14 M07375_2.00	Arabidopsis thaliana	NAAAGTCAACGNN	NNCGTTGACTTTN	Dap-seq OMalley et al.(2016) WRKY14_col_a	0.868	0.695
WRKY14 M07376_2.00	Arabidopsis thaliana	NAAAGTCAACGNH	DNCGTTGACTTTN	Dap-seq OMalley et al.(2016) WRKY14_colamp_a	0.868	0.695
WRKY21 M02553_2.00	Arabidopsis thaliana	NNRGTCAAMN	NKTTGACYNN	PBM Weirauch et al.(2014) pTH7422	0.867	0.797
WRKY21 M07389_2.00	Arabidopsis thaliana	HAAAGTCAACNNH	DNNGTTGACTTTD	Dap-seq OMalley et al.(2016) WRKY21_colamp_a	0.867	0.797
WRKY21 M07390_2.00	Arabidopsis thaliana	HAAAGTCAACK	MGTTGACTTTD	Dap-seq OMalley et al.(2016) WRKY21_col	0.867	0.797
WRKY11 M02559_2.00	Arabidopsis thaliana	NDGTCAAHNN	NNDTTGACHN	PBM Weirauch et al.(2014) pTH8091	0.865	0.814
WRKY11 M07415_2.00	Arabidopsis thaliana	NHAAAGTCAACBNH	DNVGTTGACTTTDN	Dap-seq OMalley et al.(2016) WRKY11_col_a	0.865	0.814
WRKY11 M11464_2.00	Arabidopsis thaliana	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$WRKY11_Q2	0.865	0.814
WRKY7 M07412_2.00	Arabidopsis thaliana	NNDDDNNNNMAAAGTCAACGV	BCGTTGACTTTKNNNNHHHNN	Dap-seq OMalley et al.(2016) WRKY7_colamp_a	0.865	0.797
WRKY7 M07413_2.00	Arabidopsis thaliana	NAAAAGTCAACKNN	NNMGTTGACTTTTN	Dap-seq OMalley et al.(2016) WRKY7_col	0.865	0.797
WRKY15 M02549_2.00	Arabidopsis thaliana	NRGTCAAMNN	NNKTTGACYN	PBM Weirauch et al.(2014) pTH7602	0.863	0.797
WRKY15 M07383_2.00	Arabidopsis thaliana	AAAAGTCAACKN	NMGTTGACTTTT	Dap-seq OMalley et al.(2016) WRKY15_colamp_a	0.863	0.797
WRKY15 M07384_2.00	Arabidopsis thaliana	NWAAGTCAACB	VGTTGACTTWN	Dap-seq OMalley et al.(2016) WRKY15_col_b	0.863	0.797
WRKY17 M02550_2.00	Arabidopsis thaliana	NNDGTCAAHN	NDTTGACHNN	PBM Weirauch et al.(2014) pTH8088	0.862	0.797
WRKY17 M07385_2.00	Arabidopsis thaliana	NHAAAGTCAACRNN	NNYGTTGACTTTDN	Dap-seq OMalley et al.(2016) WRKY17_col_a	0.862	0.797
WRKY17 M07386_2.00	Arabidopsis thaliana	NMAAAGTCAACGN	NCGTTGACTTTKN	Dap-seq OMalley et al.(2016) WRKY17_colamp_a	0.862	0.797
WRKY22 M02557_2.00	Arabidopsis thaliana	NNNKTMHDNN	NNHDKAMNNN	PBM Weirauch et al.(2014) pTH7320	0.861	0.695
WRKY22 M07400_2.00	Arabidopsis thaliana	AAAAGTCAACKNH	DNMGTTGACTTTT	Dap-seq OMalley et al.(2016) WRKY22_colamp_a	0.861	0.695
WRKY22 M07401_2.00	Arabidopsis thaliana	NAAAGTCAACKNH	DNMGTTGACTTTN	Dap-seq OMalley et al.(2016) WRKY22_col	0.861	0.695
WRKY29 M02558_2.00	Arabidopsis thaliana	NNNGTCHDNN	NNHDGACNNN	PBM Weirauch et al.(2014) pTH9604	0.853	0.627
WRKY29 M07410_2.00	Arabidopsis thaliana	HAAAGTCAACK	MGTTGACTTTD	Dap-seq OMalley et al.(2016) WRKY29_col_a	0.853	0.627
WRKY29 M07411_2.00	Arabidopsis thaliana	HWWAGTCAAMDNN	NNHKTTGACTWWD	Dap-seq OMalley et al.(2016) WRKY29_colamp_a	0.853	0.627
ZAP1 M00982_2.00	Arabidopsis thaliana	NRGTCAAN	NTTGACYN	PBM Lindemose et al.(2014) WRKY1	0.828	0.627
WRKY48 M02565_2.00	Arabidopsis thaliana	NNVGTCADNN	NNHTGACBNN	PBM Weirauch et al.(2014) pTH7552	0.827	0.542
WRKY23 M02556_2.00	Arabidopsis thaliana	RGTCAACG	CGTTGACY	PBM Weirauch et al.(2014) pTH7387	0.826	0.492
WRKY23 M01089_2.00	Arabidopsis thaliana	NRGTCAAM	KTTGACYN	PBM Sullivan et al.(2014) pTH7671	0.826	0.492
WRKY28 M07406_2.00	Arabidopsis thaliana	HAAAGTCAAMNNH	DNNKTTGACTTTD	Dap-seq OMalley et al.(2016) WRKY28_col_a	0.825	0.525
WRKY28 M07407_2.00	Arabidopsis thaliana	VAAAGTCAAMG	CKTTGACTTTB	Dap-seq OMalley et al.(2016) WRKY28_colamp_a	0.825	0.525
WRKY8 M02564_2.00	Arabidopsis thaliana	NRGTCAAHN	NDTTGACYN	PBM Weirauch et al.(2014) pTH7554	0.825	0.508
WRKY8 M07428_2.00	Arabidopsis thaliana	NAAAAGTCAACRNHW	WDNYGTTGACTTTTN	Dap-seq OMalley et al.(2016) WRKY8_colamp_a	0.825	0.508
WRKY8 M07429_2.00	Arabidopsis thaliana	NNVAAAGTCAACRNH	DNYGTTGACTTTBNN	Dap-seq OMalley et al.(2016) WRKY8_col	0.825	0.508
WRKY71 M07374_2.00	Arabidopsis thaliana	HAAAGTCAAMN	NKTTGACTTTD	Dap-seq OMalley et al.(2016) WRKY71_col_a	0.824	0.525
WRKY57 M02547_2.00	Arabidopsis thaliana	NNRGTCAAHN	NDTTGACYNN	PBM Weirauch et al.(2014) pTH7917	0.822	0.525
fgenesh1_pg.C_Chr_11.0001000193 M02570_2.00	Ostreococcus tauri	NRGTCARNN	NNYTGACYN	PBM Weirauch et al.(2014) pTH9432	0.813	0.559
WRKY59 M07382_2.00	Arabidopsis thaliana	NDWWAGTCAAMN	NKTTGACTWWHN	Dap-seq OMalley et al.(2016) WRKY59_col_a	0.810	0.508
For this family, TFs with SR scores > 0.808* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
chr4.CM0244.470.nc	WRKY	241	299	TDDFQWRKYGQKPIKGSPYPRGYYKCSSEKGCPARKHVERAQDDPNMLIVTYEGEHRHL

Links
Other WRKY family TFs
Other *Lotus japonicus* TFs

1632 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action
AMTR_s00017p00086440	Amborella trichopoda	AMTR_s00017p00086440	I
Aquca_017_00778	Aquilegia coerulea	Aquca_017_00778	I
BGIOSGA004888	Oryza indica	BGIOSGA004888	I
Bo8g027000	Brassica oleracea	Bo8g027000	I
Bostr.1040s0032	Boechera stricta	Bostr.1040s0032	I
Bra040971	Brassica rapa	Bra040971	I
BRADI2G56320	Brachypodium distachyon	BRADI2G56320	I
Cagra.12398s0002	Capsella grandiflora	Cagra.12398s0002	I
Carubv10008876m.g	Capsella rubella	Carubv10008876m.g	I
cassava22193.valid.m1	Manihot esculenta	cassava22193.valid.m1	I
cassava24483.valid.m1	Manihot esculenta	cassava24483.valid.m1	I
Ca_04300	Cicer arietinum	Ca_04300	I
Ciclev10000850m.g	Citrus clementina	Ciclev10000850m.g	I
Cla016623	Citrullus lanatus	Cla016623	I
Cucsa.079940	Cucumis sativus	Cucsa.079940	I
Eucgr.F02627	Eucalyptus grandis	Eucgr.F02627	I
F775_04088	Aegilops tauschii	F775_04088	I
gene27486-v1.0-hybrid	Fragaria vesca	gene27486-v1.0-hybrid	I
Gorai.006G131700	Gossypium raimondii	Gorai.006G131700	I
GRMZM2G075956	Zea mays	GRMZM2G075956	I
GRMZM2G129428	Zea mays	GRMZM2G129428	I
GSMUA_Achr10G15970_001	Musa acuminata	GSMUA_Achr10G15970_001	I
GSMUA_Achr5G01170_001	Musa acuminata	GSMUA_Achr5G01170_001	I
LPERR01G33350	Leersia perrieri	LPERR01G33350	I
MDP0000141403	Malus domestica	MDP0000141403	I
MDP0000199559	Malus domestica	MDP0000199559	I
MDP0000453148	Malus domestica	MDP0000453148	I
MDP0000551046	Malus domestica	MDP0000551046	I
MDP0000807856	Malus domestica	MDP0000807856	I
mgf000060m	Mimulus guttatus	mgf000060m	I
MLOC_10987	Hordeum vulgare	MLOC_10987	I
OB01G47470	Oryza brachyantha	OB01G47470	I
OBART01G38810	Oryza barthii	OBART01G38810	I
OLONG_020555	Oryza longistaminata	OLONG_020555	I
ONIVA01G43630	Oryza nivara	ONIVA01G43630	I
OPUNC01G37530	Oryza punctata	OPUNC01G37530	I
orange1.1g009831m.g	Citrus sinensis	orange1.1g009831m.g	I
ORGLA01G0326400	Oryza glaberrima	ORGLA01G0326400	I
ORUFI01G42150	Oryza rufipogon	ORUFI01G42150	I
OS01G0871200	Oryza sativa	OS01G0871200	I
Pavir.J06328	Panicum virgatum	Pavir.J06328	I
Pavir.J12018	Panicum virgatum	Pavir.J12018	I
Pavir.J14096	Panicum virgatum	Pavir.J14096	I
PGSC0003DMG400009234	Solanum tuberosum	PGSC0003DMG400009234	I
PK23301.1	Cannabis sativa	PK23301.1	I
Pm022201	Prunus mume	Pm022201	I
PRUPE_ppa004510mg	Prunus persica	PRUPE_ppa004510mg	I
Sb03g041170	Sorghum bicolor	Sb03g041170	I
Si001053m.g	Setaria italica	Si001053m.g	I
Solyc11g017140.1	Solanum lycopersicum	Solyc11g017140.1	I
STOP1	Arabidopsis thaliana	AT1G34370	D
STOP1	Vitis vinifera	VIT_18s0072g00840	I
STOP1	Arabidopsis lyrata	fgenesh2_kg.1__3547__AT1G34370.2	I
TCM_036719	Theobroma cacao	TCM_036719	I
Thhalv10007411m.g	Eutrema salsugineum	Thhalv10007411m.g	I
TRAES3BF044200110CFD_g	Triticum aestivum	TRAES3BF044200110CFD_g	I
Traes_3AL_00FAACD5D	Triticum aestivum	Traes_3AL_00FAACD5D	I
Traes_3DL_0284E68CC1	Triticum aestivum	Traes_3DL_0284E68CC1	I
TRIUR3_13796	Triticum urartu	TRIUR3_13796	I

chr4.CM0244.470.nc (Lotus japonicus) WRKY

TF Information

Directly determined binding motifs

Motifs from related TFs

DNA Binding Domains

Links

1632 Related TFs

chr4.CM0244.470.nc **(Lotus japonicus)
WRKY**