CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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UPC2
(
Saccharomyces cerevisiae
)
Zinc cluster
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00172 (Zn_clus)
IPR001138
YDR213W
T388340_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
UPC2
M00920_2.00
Saccharomyces cerevisiae
NTCGTWYVN
NBRWACGAN
PBM
Gordan et al.(2011)
Upc2
(Direct)
(Direct)
UPC2
M07508_2.00
Saccharomyces cerevisiae
NRWACGA
TCGTWYN
PBM, CSA and or DIP-chip
Mathelier et al.(2014)
MA0411.1
(Direct)
(Direct)
UPC2
M08654_2.00
Saccharomyces cerevisiae
NRWACGA
TCGTWYN
Misc
DeBoer et al.(2011)
YDR213W_544
(Direct)
(Direct)
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
ECM22
M00096_2.00
Saccharomyces cerevisiae
NNCSGRDNHN
NDNHYCSGNN
PBM
Badis et al.(2008)
ECM22_2066
0.541
0.692
ECM22
M00924_2.00
Saccharomyces cerevisiae
NNDWACGRN
NYCGTWHNN
PBM
Gordan et al.(2011)
Ecm22
0.541
0.692
ECM22
M01589_2.00
Saccharomyces cerevisiae
NNNCGGVN
NBCCGNNN
PBM
Zhu et al.(2009)
Ecm22
0.541
0.692
ECM22
M07522_2.00
Saccharomyces cerevisiae
TCCGGAD
HTCCGGA
PBM, CSA and or DIP-chip
Mathelier et al.(2014)
MA0292.1
0.541
0.692
ECM22
M08679_2.00
Saccharomyces cerevisiae
NNYCGGRNNDMCGGAVNH
DNBTCCGKHNNYCCGRNN
Misc
DeBoer et al.(2011)
YLR228C_849
0.541
0.692
For this family, TFs with SR scores >
0.537
will likely have a similar motif
Experimental Constructs
Motif ID
Domain
From
To
Sequence
M00920_2.00
Zinc cluster
49
88
NGCDNCKRRRVKCDEGKPACRKCTNMKLECQYTPIHLRKG
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
YDR213W
Zinc cluster
49
88
NGCDNCKRRRVKCDEGKPACRKCTNMKLECQYTPIHLRKG
Links
Other
Zinc cluster
family TFs
Other
Saccharomyces cerevisiae
TFs
22 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy