RDR1 (Saccharomyces cerevisiae)
Zinc cluster

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00172 (Zn_clus) IPR001138 YOR380W T388378_2.00 Ensembl (2018-Dec-8) Link out
NCBI Gene Info:
Enables DNA-binding transcription factor activity. Involved in response to xenobiotic stimulus. Predicted to be located in nucleus. [provided by Alliance of Genome Resources, Apr 2022]

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RDR1
M00108_2.00		 Saccharomyces cerevisiae
DCGGRWN
NWYCCGH		 PBM
Badis et al.(2008)
RDR1_2112		 (Direct) (Direct)
RDR1
M01597_2.00		 Saccharomyces cerevisiae
NCGGRWNN
NNWYCCGN		 PBM
Zhu et al.(2009)
Rdr1		 (Direct) (Direct)
RDR1
M07535_2.00		 Saccharomyces cerevisiae
WGCGGAAN
NTTCCGCW		 PBM, CSA and or DIP-chip
Mathelier et al.(2014)
MA0360.1		 (Direct) (Direct)
RDR1
M08694_2.00		 Saccharomyces cerevisiae
WTCCGCGGAR
YTCCGCGGAW		 Misc
DeBoer et al.(2011)
YOR380W_756		 (Direct) (Direct)
RDR1
M08695_2.00		 Saccharomyces cerevisiae
NNNNNNNNGCGGAWANNNNNB
VNNNNNTWTCCGCNNNNNNNN		 Misc
DeBoer et al.(2011)
YOR380W_843		 (Direct) (Direct)

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
For this family, TFs with SR scores > 0.537 will likely have a similar motif

Experimental Constructs

Motif ID Domain From To Sequence
M00108_2.00 Zinc cluster 17 53
M01597_2.00 Zinc cluster 18 54

DNA Binding Domains

Protein ID Domain From To Sequence
YOR380W Zinc cluster 18 54

Links

Other Zinc cluster family TFs
Other Saccharomyces cerevisiae TFs

Invalid Input OrderBy

5 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action