15982_YLR228C (Saccharomyces paradoxus)
Zinc cluster

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00172 (Zn_clus) IPR001138 15982_YLR228C T390778_2.00 Superfamily (2010-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ECM22
M00096_2.00 		Saccharomyces cerevisiae
NNCSGRDNHN
NDNHYCSGNN		 PBM
Badis et al.(2008)
ECM22_2066 		0.683 1.000
ECM22
M00924_2.00 		Saccharomyces cerevisiae
NNDWACGRN
NYCGTWHNN		 PBM
Gordan et al.(2011)
Ecm22 		0.683 1.000
ECM22
M01589_2.00 		Saccharomyces cerevisiae
NNNCGGVN
NBCCGNNN		 PBM
Zhu et al.(2009)
Ecm22 		0.683 1.000
ECM22
M07522_2.00 		Saccharomyces cerevisiae
TCCGGAD
HTCCGGA		 PBM, CSA and or DIP-chip
Mathelier et al.(2014)
MA0292.1 		0.683 1.000
ECM22
M08679_2.00 		Saccharomyces cerevisiae
NNYCGGRNNDMCGGAVNH
DNBTCCGKHNNYCCGRNN		 Misc
DeBoer et al.(2011)
YLR228C_849 		0.683 1.000
UPC2
M00920_2.00 		Saccharomyces cerevisiae
NTCGTWYVN
NBRWACGAN		 PBM
Gordan et al.(2011)
Upc2 		0.541 0.675
UPC2
M07508_2.00 		Saccharomyces cerevisiae
NRWACGA
TCGTWYN		 PBM, CSA and or DIP-chip
Mathelier et al.(2014)
MA0411.1 		0.541 0.675
UPC2
M08654_2.00 		Saccharomyces cerevisiae
NRWACGA
TCGTWYN		 Misc
DeBoer et al.(2011)
YDR213W_544 		0.541 0.675
For this family, TFs with SR scores > 0.537 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
15982_YLR228C Zinc cluster 42 81

Links

Other Zinc cluster family TFs
Other Saccharomyces paradoxus TFs

11 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
estExt_fgenesh2_pg.C_30642 Neurospora discreta estExt_fgenesh2_pg.C_30642 N 0.000
e_gw1.7.202.1 Mycosphaerella graminicola e_gw1.7.202.1 N 0.000
M437DRAFT_70501 Aureobasidium melanogenum M437DRAFT_70501 N 0.000
MAJ_10042 Metarhizium majus MAJ_10042 N 0.000
MGU_03696 Metarhizium guizhouense MGU_03696 N 0.000
Mycgr3G44516 Zymoseptoria tritici Mycgr3G44516 N 0.000
PV08_01575 Exophiala spinifera PV08_01575 N 0.000
PVAR5_5086 Byssochlamys spectabilis PVAR5_5086 N 0.000
S40285_03647 Stachybotrys chlorohalonata S40285_03647 N 0.000