RAP2-13 (Arabidopsis thaliana)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00847 (AP2) IPR001471 AT1G22190 T000412_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RAP2-4
M01612_2.00 		Arabidopsis thaliana
NRCCGHCMNN
NNKGDCGGYN		 PBM
Weirauch et al.(2014)
pTH8092 		0.867 1.000
ERF055
M06577_2.00 		Arabidopsis thaliana
NHDYCACCGHCMHH
DDKGDCGGTGRHDN		 Dap-seq
OMalley et al.(2016)
At1g36060_col_a 		0.848 0.960
ERF055
M06578_2.00 		Arabidopsis thaliana
NHDYCACCGHCMHH
DDKGDCGGTGRHDN		 Dap-seq
OMalley et al.(2016)
At1g36060_colamp_a 		0.848 0.960
AT5G65130
M06686_2.00 		Arabidopsis thaliana
YCDYCDCCRCCGCCN
NGGCGGYGGHGRHGR		 Dap-seq
OMalley et al.(2016)
At5g65130_col_a 		0.721 0.860
AT5G65130
M06687_2.00 		Arabidopsis thaliana
NNNNHNNHDSCRCCGMCMW
WKGKCGGYGSHDNNDNNNN		 Dap-seq
OMalley et al.(2016)
At5g65130_colamp_a 		0.721 0.860
ERF054
M06647_2.00 		Arabidopsis thaliana
NNNNNNNNNHHDSCRCCGHC
GDCGGYGSHDDNNNNNNNNN		 Dap-seq
OMalley et al.(2016)
At4g28140_col_a 		0.684 0.820
ERF054
M06648_2.00 		Arabidopsis thaliana
NNNNHDBCRCCGHCM
KGDCGGYGVHDNNNN		 Dap-seq
OMalley et al.(2016)
At4g28140_colamp_a 		0.684 0.820
WIN1
M01603_2.00 		Arabidopsis thaliana
VCRCCGCNNN
NNNGCGGYGB		 PBM
Weirauch et al.(2014)
pTH7566 		0.683 0.660
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
AT1G22190.1 AP2 81 132

Links

Other AP2 family TFs
Other Arabidopsis thaliana TFs

457 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AOL_s00110g185 Arthrobotrys oligospora AOL_s00110g185 I 0.000
BGHDH14_bgh01891 Blumeria graminis BGHDH14_bgh01891 I 0.000
CHGG_09596 Chaetomium globosum CHGG_09596 I 0.000
G647_01190 Cladophialophora carrionii G647_01190 I 0.000
PV07_04845 Cladophialophora immunda PV07_04845 I 0.000
A1O5_06611 Cladophialophora psammophila A1O5_06611 N 0.000
A1O7_01132 Cladophialophora yegresii A1O7_01132 I 0.000
CFIO01_10586 Colletotrichum fioriniae CFIO01_10586 N 0.000
CH063_12034 Colletotrichum higginsianum CH063_12034 N 0.000
e_gw1.8.145.1 Cryphonectria parasitica e_gw1.8.145.1 I 0.000
estExt_fgenesh1_pg.C_60724 Cryphonectria parasitica estExt_fgenesh1_pg.C_60724 I 0.000
H072_165 Dactylellina haptotyla H072_165 I 0.000
PV10_04640 Exophiala mesophila PV10_04640 N 0.000
PV06_08981 Exophiala oligosperma PV06_08981 N 0.000
Z517_12550 Fonsecaea pedrosoi Z517_12550 I 0.000
FFUJ_07470 Fusarium fujikuroi FFUJ_07470 I 0.000
FGRRES_10069 Fusarium graminearum FGRRES_10069 I 0.000
FPSE_00487 Fusarium pseudograminearum FPSE_00487 I 0.000
FVEG_02704 Fusarium verticillioides FVEG_02704 I 0.000
Moror_2983 Moniliophthora roreri Moror_2983 N 0.000
MYCTH_2308823 Myceliophthora thermophila MYCTH_2308823 I 0.000
NCU02307 Neurospora crassa NCU02307 D 0.000
estExt_Genewise1Plus.C_90712 Neurospora discreta estExt_Genewise1Plus.C_90712 I 0.000
NEUTE1DRAFT_124026 Neurospora tetrasperma NEUTE1DRAFT_124026 I 0.000
PMAA_046250 Penicillium marneffei PMAA_046250 I 0.000
PODANS_5_9700 Podospora anserina PODANS_5_9700 I 0.000
Z518_09554 Rhinocladiella mackenziei Z518_09554 N 0.000
SMAC_09353 Sordaria macrospora SMAC_09353 I 0.000
PMAA_046250 Talaromyces marneffei PMAA_046250 I 0.000
TSTA_035500 Talaromyces stipitatus TSTA_035500 I 0.000
THITE_2050890 Thielavia terrestris THITE_2050890 I 0.000
PV09_05710 Verruconis gallopava PV09_05710 N 0.000