CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

Si011648m.g *(Setaria italica)* AP2
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source	Animal TF db
PF00847 (AP2)	IPR001471	Si011648m.g	T005267_2.00	Ensembl (2018-Dec-8)	Link out
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
ERF5 M00721_2.00	Arabidopsis thaliana	NNNGSMRNMN	NKNYKSCNNN	PBM Chang et al.(2013) pTH7197	0.822	0.788
ERF5 M06674_2.00	Arabidopsis thaliana	YCDYCKCCGCCGYCD	HGRCGGCGGMGRHGR	Dap-seq OMalley et al.(2016) ERF5_col_a	0.822	0.788
ERF5 M06675_2.00	Arabidopsis thaliana	NHDBCGCCGCCRYHDNHDNNN	NNNHDNHDRYGGCGGCGVHDN	Dap-seq OMalley et al.(2016) ERF5_colamp_a	0.822	0.788
ERF5_TOBAC M09729_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$ERF4_02	0.808	0.750
PK02330.1 M01095_2.00	Cannabis sativa	NNNGCCGBCN	NGVCGGCNNN	PBM Lambert et al.(2019) pTH10093	0.801	0.750
ERF104 M06682_2.00	Arabidopsis thaliana	NNHHDYMDCCGCCGCCRYH	DRYGGCGGCGGHKRHDDNN	Dap-seq OMalley et al.(2016) ERF104_col_a	0.769	0.750
ERF104 M06683_2.00	Arabidopsis thaliana	BHDSCGCCGCCRYHD	HDRYGGCGGCGSHDV	Dap-seq OMalley et al.(2016) ERF104_colamp_a	0.769	0.750
ERF105 M01632_2.00	Arabidopsis thaliana	CGCCGGCM	KGCCGGCG	PBM Weirauch et al.(2014) pTH7233	0.763	0.731
ERF105 M06676_2.00	Arabidopsis thaliana	NHNNNNNNNNHNNHDBCGCCGCCR	YGGCGGCGVHDNNDNNNNNNNNDN	Dap-seq OMalley et al.(2016) ERF105_colamp_a	0.763	0.731
ERF105 M06677_2.00	Arabidopsis thaliana	HDSCGCCGCCRYHDH	DHDRYGGCGGCGSHD	Dap-seq OMalley et al.(2016) ERF105_col	0.763	0.731
ERF096 M01630_2.00	Arabidopsis thaliana	NVGCCGNCNN	NNGNCGGCBN	PBM Weirauch et al.(2014) pTH7909	0.761	0.750
RAP2-2 M00719_2.00	Arabidopsis thaliana	NNRBYGNN	NNCRVYNN	PBM Chang et al.(2013) pTH7227	0.759	0.712
ERF2_TOBAC M09727_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$ERF2_01	0.737	0.731
ERF14 M01045_2.00	Arabidopsis thaliana	NVGCCGNCN	NGNCGGCBN	PBM Sullivan et al.(2014) pTH9793	0.737	0.750
AT2G33710 M01613_2.00	Arabidopsis thaliana	NSMGCCGHMN	NKDCGGCKSN	PBM Weirauch et al.(2014) pTH7543	0.731	0.712
AT2G33710 M06606_2.00	Arabidopsis thaliana	DBCGCCGCCGYHDHHDNH	DNHDDHDRCGGCGGCGVH	Dap-seq OMalley et al.(2016) At2g33710_colamp_a	0.731	0.712
AT2G33710 M06607_2.00	Arabidopsis thaliana	NHDYCKCCGCCGYMD	HKRCGGCGGMGRHDN	Dap-seq OMalley et al.(2016) At2g33710_col	0.731	0.712
ERF095 M06624_2.00	Arabidopsis thaliana	YCDCCGCCGCCRYHD	HDRYGGCGGCGGHGR	Dap-seq OMalley et al.(2016) ESE1_col_a	0.730	0.769
ERF095 M06625_2.00	Arabidopsis thaliana	YHNYYDYHDCCGCCGCCDYH	DRHGGCGGCGGHDRHRRNDR	Dap-seq OMalley et al.(2016) ESE1_colamp_a	0.730	0.769
LOC_Os08g36920 M01634_2.00	Oryza sativa	NNNGSCGHNN	NNDCGSCNNN	PBM Weirauch et al.(2014) pTH8596	0.730	0.712
Q7Y1W2_TOBAC M09735_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$CEF1_01	0.724	0.673
O65242_TOBAC M09730_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$TSI1_01	0.723	0.635
ERF6 M01621_2.00	Arabidopsis thaliana	NNGCCGGCVN	NBGCCGGCNN	PBM Weirauch et al.(2014) pTH7228	0.718	0.692
ERF6 M06637_2.00	Arabidopsis thaliana	NHNHHDCCGCCGCCRYHDHHN	NDDHDRYGGCGGCGGHDDNDN	Dap-seq OMalley et al.(2016) ERF6_col	0.718	0.692
ERF1A M00848_2.00	Arabidopsis thaliana	NNNNRNN	NNYNNNN	PBM Franco-Zorrilla et al.(2014) ATERF1	0.717	0.712
ERF1A M00720_2.00	Arabidopsis thaliana	NMGCCRNCN	NGNYGGCKN	PBM Chang et al.(2013) pTH7202	0.717	0.712
EREBP1 M09708_2.00	Oryza sativa	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$EREBP1_01	0.715	0.635
ERF106 M01628_2.00	Arabidopsis thaliana	NNNVCRVCN	NGBYGBNNN	PBM Weirauch et al.(2014) pTH7426	0.709	0.692
CRF3 M01633_2.00	Arabidopsis thaliana	NNGCCRNNN	NNNYGGCNN	PBM Weirauch et al.(2014) pTH8110	0.709	0.635
ERF113 M01629_2.00	Arabidopsis thaliana	NNGCCGHHNN	NNDDCGGCNN	PBM Weirauch et al.(2014) pTH8097	0.709	0.673
ERF2 M01631_2.00	Arabidopsis thaliana	NNNGCCGNCN	NGNCGGCNNN	PBM Weirauch et al.(2014) pTH8113	0.699	0.692
ERF2 M06672_2.00	Arabidopsis thaliana	HHNHHNYHDYCGCCGCCRYND	HNRYGGCGGCGRHDRNDDNDD	Dap-seq OMalley et al.(2016) ERF2_col_a	0.699	0.692
ERF2 M06673_2.00	Arabidopsis thaliana	NNNNNNNHNNHDSMGCCGCCR	YGGCGGCKSHDNNDNNNNNNN	Dap-seq OMalley et al.(2016) ERF2_colamp_a	0.699	0.692
CRF2 M01622_2.00	Arabidopsis thaliana	SCGCCGCC	GGCGGCGS	PBM Weirauch et al.(2014) pTH8680	0.694	0.635
RAP2-12 M01046_2.00	Arabidopsis thaliana	RSMGBMNNNN	NNNNKVCKSY	PBM Sullivan et al.(2014) pTH7359	0.694	0.654
RAP2-12 M06588_2.00	Arabidopsis thaliana	NHDCCGCCGCCRHHDHNNNHN	NDNNNDHDDYGGCGGCGGHDN	Dap-seq OMalley et al.(2016) RAP212_col_a	0.694	0.654
CRF4 M01626_2.00	Arabidopsis thaliana	SCGCCGCC	GGCGGCGS	PBM Weirauch et al.(2014) pTH8261	0.688	0.635
CRF4 M06645_2.00	Arabidopsis thaliana	BMDCCGCCGCCRCHDHHDCYN	NRGHDDHDGYGGCGGCGGHKV	Dap-seq OMalley et al.(2016) CRF4_col_a	0.688	0.635
CRF4 M06646_2.00	Arabidopsis thaliana	YCDYCGCCGCCGYYD	HRRCGGCGGCGRHGR	Dap-seq OMalley et al.(2016) CRF4_colamp_a	0.688	0.635
ERF091 M06638_2.00	Arabidopsis thaliana	NNHNYHDCCGCCGCCRY	RYGGCGGCGGHDRNDNN	Dap-seq OMalley et al.(2016) AT4G18450_col_a	0.686	0.692
Q2TN80_WHEAT M09715_2.00	Triticum aestivum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$ERF1_02	0.684	0.635
Q84J59_MAIZE M09717_2.00	Zea mays	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$BD1_01	0.683	0.635
ERF1B M01619_2.00	Arabidopsis thaliana	NMGCCGCCRN	NYGGCGGCKN	PBM Weirauch et al.(2014) pTH8795	0.680	0.654
ERF1B M06626_2.00	Arabidopsis thaliana	NHNNHDYMGCCGCCRYHDNHDNNNNNNN	NNNNNNNHDNHDRYGGCGGCKRHDNNDN	Dap-seq OMalley et al.(2016) ERF1_col_a	0.680	0.654
ERF1B M06627_2.00	Arabidopsis thaliana	MGCCGCCD	HGGCGGCK	Dap-seq OMalley et al.(2016) ERF1_colamp_a	0.680	0.654
ERF1B M09703_2.00	Arabidopsis thaliana	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$ERF1_Q2_01	0.680	0.654
ERF1B M09704_2.00	Arabidopsis thaliana	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$ERF1_Q2	0.680	0.654
0100010458 M01644_2.00	Ostreococcus tauri	MGCCGSCR	YGSCGGCK	PBM Weirauch et al.(2014) pTH9447	0.677	0.673
For this family, TFs with SR scores > 0.677* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
Si011648m	AP2	147	199	RKYRGVRQRPWGKYAAEIRDPKRRGSRVWLGTYDTPVEAARAYDRAAFRMRGA

Links
Other AP2 family TFs
Other *Setaria italica* TFs

1595 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action
ENSAMEG00000017735	Ailuropoda melanoleuca	ENSAMEG00000017735	I
Alligator_sinensis_CCG009270.1	Alligator sinensis	Alligator_sinensis_CCG009270.1	I
ENSAPLG00000013409	Anas platyrhynchos	ENSAPLG00000013409	I
NFKB2	Anolis carolinensis	ENSACAG00000014215	I
Afo_R002575	Aptenodytes forsteri	Afo_R002575	I
ENSBTAP00000007904-D1	Bos grunniens	ENSBTAP00000007904-D1	I
NFKB2	Bos taurus	ENSBTAG00000006017	I
Brh_R009664	Buceros rhinoceros	Brh_R009664	I
NFKB2	Callithrix jacchus	ENSCJAG00000017928	I
Aan_R011824	Calypte anna	Aan_R011824	I
NFKB2	Canis familiaris	ENSCAFG00000010155	I
NFKB2	Cavia porcellus	ENSCPOG00000004847	I
Cmyd_10006544	Chelonia mydas	Cmyd_10006544	I
ENSCSAG00000005442	Chlorocebus sabaeus	ENSCSAG00000005442	I
NFKB2	Dasypus novemcinctus	ENSDNOG00000032784	I
Nfkb2	Dipodomys ordii	ENSDORG00000013409	I
NFKB2	Echinops telfairi	ENSETEG00000002347	I
NFKB2	Equus caballus	ENSECAG00000019593	I
NFKB2	Felis catus	ENSFCAG00000001242	I
ENSFALG00000007271	Ficedula albicollis	ENSFALG00000007271	I
NFKB2	Gallus gallus	ENSGALG00000005653	I
Gfo_R002459	Geospiza fortis	Gfo_R002459	I
NFKB2	Gorilla gorilla	ENSGGOG00000006971	I
NFKB2	Homo sapiens	ENSG00000077150	D
ENSSTOG00000002191	Ictidomys tridecemlineatus	ENSSTOG00000002191	I
NFKB2	Loxodonta africana	ENSLAFG00000006805	I
ENSP00000189444	Macaca fascicularis	ENSP00000189444	I
NFKB2	Macaca mulatta	ENSMMUG00000002990	I
ENSMEUG00000011176	Macropus eugenii	ENSMEUG00000011176	I
ENSMGAG00000007084	Meleagris gallopavo	ENSMGAG00000007084	I
NFKB2	Microcebus murinus	ENSMICG00000011856	I
ENSMPUG00000016882	Mustela putorius furo	ENSMPUG00000016882	I
Nfkb2	Mus musculus	ENSMUSG00000025225	D
Myotis_brandtii_NFKB2_10025917	Myotis brandtii	Myotis_brandtii_NFKB2_10025917	I
NFKB2	Myotis lucifugus	ENSMLUG00000006287	I
ENSNLEG00000015079	Nomascus leucogenys	ENSNLEG00000015079	I
Ogr18048	Ophisaurus gracilis	Ogr18048	I
ENSOANG00000030023	Ornithorhynchus anatinus	ENSOANG00000030023	I
NFKB2	Oryctolagus cuniculus	ENSOCUG00000005735	I
NFKB2	Otolemur garnettii	ENSOGAG00000016379	I
ENSOARG00000000483	Ovis aries	ENSOARG00000000483	I
NFKB2	Pan troglodytes	ENSPTRG00000002888	I
ENSPANG00000021013	Papio anubis	ENSPANG00000021013	I
Pvit_13855	Pogona vitticeps	Pvit_13855	I
NFKB2	Procavia capensis	ENSPCAG00000011503	I
Nfkb2	Rattus norvegicus	ENSRNOG00000019311	I
ENSSHAG00000018852	Sarcophilus harrisii	ENSSHAG00000018852	I
NFKB2	Sus scrofa	ENSSSCG00000010580	I
NFKB2	Taeniopygia guttata	ENSTGUG00000007491	I

Si011648m.g (Setaria italica) AP2

TF Information

Directly determined binding motifs

Motifs from related TFs

DNA Binding Domains

Links

1595 Related TFs

Si011648m.g **(Setaria italica)
AP2**