Cagra.0096s0029 (Capsella grandiflora)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 Cagra.0096s0029 T007682_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RAP2-4
M01612_2.00 		Arabidopsis thaliana
NRCCGHCMNN
NNKGDCGGYN		 PBM
Weirauch et al.(2014)
pTH8092 		0.867 1.000
ERF055
M06577_2.00 		Arabidopsis thaliana
NHDYCACCGHCMHH
DDKGDCGGTGRHDN		 Dap-seq
OMalley et al.(2016)
At1g36060_col_a 		0.848 0.960
ERF055
M06578_2.00 		Arabidopsis thaliana
NHDYCACCGHCMHH
DDKGDCGGTGRHDN		 Dap-seq
OMalley et al.(2016)
At1g36060_colamp_a 		0.848 0.960
AT5G65130
M06686_2.00 		Arabidopsis thaliana
YCDYCDCCRCCGCCN
NGGCGGYGGHGRHGR		 Dap-seq
OMalley et al.(2016)
At5g65130_col_a 		0.721 0.860
AT5G65130
M06687_2.00 		Arabidopsis thaliana
NNNNHNNHDSCRCCGMCMW
WKGKCGGYGSHDNNDNNNN		 Dap-seq
OMalley et al.(2016)
At5g65130_colamp_a 		0.721 0.860
ERF054
M06647_2.00 		Arabidopsis thaliana
NNNNNNNNNHHDSCRCCGHC
GDCGGYGSHDDNNNNNNNNN		 Dap-seq
OMalley et al.(2016)
At4g28140_col_a 		0.684 0.820
ERF054
M06648_2.00 		Arabidopsis thaliana
NNNNHDBCRCCGHCM
KGDCGGYGVHDNNNN		 Dap-seq
OMalley et al.(2016)
At4g28140_colamp_a 		0.684 0.820
WIN1
M01603_2.00 		Arabidopsis thaliana
VCRCCGCNNN
NNNGCGGYGB		 PBM
Weirauch et al.(2014)
pTH7566 		0.683 0.660
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cagra.0096s0029.1.p AP2 158 209

Links

Other AP2 family TFs
Other Capsella grandiflora TFs

457 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSBTAP00000031693-D1 Bos grunniens ENSBTAP00000031693-D1 I
ENSBTAG00000034597 Bos taurus ENSBTAG00000034597 I
ENSBTAG00000031741 Bos taurus ENSBTAG00000031741 I
ZNF322 Callithrix jacchus ENSCJAG00000011175 I
ZNF322 Canis familiaris ENSCAFG00000030701 I
ENSCSAG00000019088 Chlorocebus sabaeus ENSCSAG00000019088 I
ZNF322 Dasypus novemcinctus ENSDNOG00000015534 I
ZNF322 Equus caballus ENSECAG00000000889 I
ZNF322 Gorilla gorilla ENSGGOG00000026339 I
ZNF322 Homo sapiens ENSG00000181315 D
ENSP00000419728 Macaca fascicularis ENSP00000419728 I
ZNF322 Macaca mulatta ENSMMUG00000017480 I
ENSMICG00000017437 Microcebus murinus ENSMICG00000017437 I
ENSMPUG00000018606 Mustela putorius furo ENSMPUG00000018606 I
ENSOARG00000018679 Ovis aries ENSOARG00000018679 I
ENSOARG00000020046 Ovis aries ENSOARG00000020046 I
ZNF322 Pan troglodytes ENSPTRG00000017837 I
ENSPPYG00000016336 Pongo abelii ENSPPYG00000016336 I
ZNF322 Procavia capensis ENSPCAG00000014729 I
ZNF322 Sus scrofa ENSSSCG00000001156 I
ZNF322 Tupaia belangeri ENSTBEG00000012598 I