Carubv10002425m.g (Capsella rubella)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 Carubv10002425m.g T007816_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
DREB2G
M06662_2.00 		Arabidopsis thaliana
DCCRCCGCYDYHDYH
DRHDRHRGCGGYGGH		 Dap-seq
OMalley et al.(2016)
At5g18450_col_a 		0.800 0.980
DREB2D
M01611_2.00 		Arabidopsis thaliana
NNRCCGHNN
NNDCGGYNN		 PBM
Weirauch et al.(2014)
pTH8108 		0.719 0.816
DREB2D
M06597_2.00 		Arabidopsis thaliana
YHNYYDCCRCCGYYD
HRRCGGYGGHRRNDR		 Dap-seq
OMalley et al.(2016)
At1g75490_col_a 		0.719 0.816
DREB2D
M06598_2.00 		Arabidopsis thaliana
HNNHDYCACCGHYWN
NWRDCGGTGRHDNND		 Dap-seq
OMalley et al.(2016)
At1g75490_colamp_a 		0.719 0.816
PK07402.1
M01097_2.00 		Cannabis sativa
NVRCCGMCH
DGKCGGYBN		 PBM
Lambert et al.(2019)
pTH11436 		0.699 0.796
PK08602.1
M01098_2.00 		Cannabis sativa
NYCACCGCYN
NRGCGGTGRN		 PBM
Lambert et al.(2019)
pTH11421 		0.688 0.776
Q8H769_WHEAT
M09721_2.00 		Triticum aestivum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DREB1_01 		0.686 0.776
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10002425m AP2 32 83

Links

Other AP2 family TFs
Other Capsella rubella TFs

187 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ANCCEY_01474 Ancylostoma ceylanicum ANCCEY_01474 N 0.000
ALUE_0001885601 Ascaris lumbricoides ALUE_0001885601 N 0.000
ASU_15182 Ascaris suum ASU_15182 N 0.000
Bm6550 Brugia malayi Bm6550 N 0.000
CBN07630 Caenorhabditis brenneri CBN07630 N 0.000
CBG05690 Caenorhabditis briggsae CBG05690 N 0.000
dmd-3 Caenorhabditis elegans WBGene00012832 D 0.000
CRE06043 Caenorhabditis remanei CRE06043 N 0.000
DME_0000028701 Dracunculus medinensis DME_0000028701 N 0.000
EEL_0000847601 Elaeophora elaphi EEL_0000847601 N 0.000
EVEC_0001283901 Enterobius vermicularis EVEC_0001283901 N 0.000
HPLM_0001382501 Haemonchus placei HPLM_0001382501 N 0.000
Hba_18486 Heterorhabditis bacteriophora Hba_18486 N 0.000
LOAG_13296 Loa loa LOAG_13296 N 0.000
NBR_0000071001 Nippostrongylus brasiliensis NBR_0000071001 N 0.000
WBGene00242840 Onchocerca volvulus WBGene00242840 N 0.000
RSKR_0000247700 Rhabditophanes kr3021 RSKR_0000247700 N 0.000
L889_g14208 Steinernema feltiae L889_g14208 N 0.000
L892_g27879 Steinernema scapterisci L892_g27879 I 0.000
SPAL_0001355700 Strongyloides papillosus SPAL_0001355700 N 0.000
SSTP_0000839900 Strongyloides stercoralis SSTP_0000839900 N 0.000
SMUV_0001103601 Syphacia muris SMUV_0001103601 N 0.000
TCLT_0000242201 Thelazia callipaeda TCLT_0000242201 N 0.000