Carubv10005709m.g (Capsella rubella)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 Carubv10005709m.g T007834_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
DREB1A
M01624_2.00 		Arabidopsis thaliana
NRCCGACNNN
NNNGTCGGYN		 PBM
Weirauch et al.(2014)
pTH8163 		0.820 0.960
DREB1A
M01625_2.00 		Arabidopsis thaliana
NNRCCGACNW
WNGTCGGYNN		 PBM
Weirauch et al.(2014)
pTH9718 		0.820 0.960
DREB1A
M06641_2.00 		Arabidopsis thaliana
HNYBRCCGACDWNN
NNWHGTCGGYVRND		 Dap-seq
OMalley et al.(2016)
CBF3_col_a 		0.820 0.960
DREB1A
M06642_2.00 		Arabidopsis thaliana
YBRCCGACATN
NATGTCGGYVR		 Dap-seq
OMalley et al.(2016)
CBF3_colamp_a 		0.820 0.960
DREB1C
M01623_2.00 		Arabidopsis thaliana
RCCGACAT
ATGTCGGY		 PBM
Weirauch et al.(2014)
pTH8187 		0.798 0.940
DREB1C
M06639_2.00 		Arabidopsis thaliana
NNNHBRCCGACATNN
NNATGTCGGYVDNNN		 Dap-seq
OMalley et al.(2016)
CBF2_col_a 		0.798 0.940
DREB1C
M06640_2.00 		Arabidopsis thaliana
NYBRCCGACATVN
NBATGTCGGYVRN		 Dap-seq
OMalley et al.(2016)
CBF2_colamp_a 		0.798 0.940
DREB1D
M06678_2.00 		Arabidopsis thaliana
NHBRCCGACRTNN
NNAYGTCGGYVDN		 Dap-seq
OMalley et al.(2016)
CBF4_col_a 		0.778 0.940
DREB1D
M06679_2.00 		Arabidopsis thaliana
HYRCCGACATND
HNATGTCGGYRD		 Dap-seq
OMalley et al.(2016)
CBF4_colamp_a 		0.778 0.940
DREB1G
M01635_2.00 		Oryza sativa
NYGCCGACAN
NTGTCGGCRN		 PBM
Weirauch et al.(2014)
pTH8352 		0.746 0.800
DREB1G
M09707_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DREB1G_01 		0.746 0.800
Q8S2T3_BRANA
M09745_2.00 		Brassica napus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$CBF16_01 		0.709 0.900
Q6T3U0_BRANA
M09743_2.00 		Brassica napus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DREBII1_01 		0.709 0.900
DREB1E
M09709_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DREB1E_01 		0.699 0.800
DREB1B
M06643_2.00 		Arabidopsis thaliana
DHBRCCGACRHN
NDYGTCGGYVDH		 Dap-seq
OMalley et al.(2016)
CBF1_col_a 		0.699 0.920
DREB1B
M06644_2.00 		Arabidopsis thaliana
NNNHBRCCGACAWNN
NNWTGTCGGYVDNNN		 Dap-seq
OMalley et al.(2016)
CBF1_colamp_a 		0.699 0.920
DREB1F
M00962_2.00 		Arabidopsis thaliana
NRCCGACNN
NNGTCGGYN		 PBM
LehtiShiu et al.(2015)
DDF1_Arabidopsis_thaliana 		0.697 0.740
DREB1F
M00840_2.00 		Arabidopsis thaliana
NRYCGACNN
NNGTCGRYN		 PBM
Franco-Zorrilla et al.(2014)
DDF1 		0.697 0.740
DDF1
M00964_2.00 		Arabidopsis lyrata
NRYCGACDY
RHGTCGRYN		 PBM
LehtiShiu et al.(2015)
DDF1_Arabidopsis_lyrata 		0.697 0.740
DREB1F
M06564_2.00 		Arabidopsis thaliana
NHNHYGYCGACATNN
NNATGTCGRCRDNDN		 Dap-seq
OMalley et al.(2016)
DDF1_col_a 		0.697 0.740
DREB1F
M06565_2.00 		Arabidopsis thaliana
HNDNNRYCGACAH
DTGTCGRYNNHND		 Dap-seq
OMalley et al.(2016)
DDF1_colamp_a 		0.697 0.740
DREB1F
M09701_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DREB1F_03 		0.697 0.740
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10005709m AP2 49 100

Links

Other AP2 family TFs
Other Capsella rubella TFs

195 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSAMEG00000002108 Ailuropoda melanoleuca ENSAMEG00000002108 I 0.000
ENSAMEG00000005284 Ailuropoda melanoleuca ENSAMEG00000005284 I 0.000
Alligator_sinensis_CCG015050.1 Alligator sinensis Alligator_sinensis_CCG015050.1 I 0.000
ENSACAG00000017482 Anolis carolinensis ENSACAG00000017482 I 0.000
Afo_R010081 Aptenodytes forsteri Afo_R010081 I 0.000
ENSAMXG00000016608 Astyanax mexicanus ENSAMXG00000016608 I 0.000
ENSP00000283628-D1 Bos grunniens ENSP00000283628-D1 I 0.000
UBP1 Bos taurus ENSBTAG00000003968 I 0.000
Brh_R008147 Buceros rhinoceros Brh_R008147 I 0.000
UBP1 Callithrix jacchus ENSCJAG00000012030 I 0.000
TFCP2 Callithrix jacchus ENSCJAG00000017599 I 0.000
Aan_R001501 Calypte anna Aan_R001501 I 0.000
TFCP2 Canis familiaris ENSCAFG00000007831 I 0.000
TFCP2L1 Canis familiaris ENSCAFG00000004788 I 0.000
TFCP2L1 Cavia porcellus ENSCPOG00000011523 I 0.000
Cmyd_10009085 Chelonia mydas Cmyd_10009085 I 0.000
ENSCSAG00000009395 Chlorocebus sabaeus ENSCSAG00000009395 I 0.000
ENSCSAG00000005909 Chlorocebus sabaeus ENSCSAG00000005909 I 0.000
tfcp2l1 Danio rerio ENSDARG00000029497 N 0.000
TFCP2 Equus caballus ENSECAG00000020650 I 0.000
TFCP2L1 Equus caballus ENSECAG00000024837 I 0.000
TFCP2 Felis catus ENSFCAG00000030292 I 0.000
ENSFALG00000004962 Ficedula albicollis ENSFALG00000004962 I 0.000
ENSGMOG00000007483 Gadus morhua ENSGMOG00000007483 I 0.000
TFCP2L1 Gallus gallus ENSGALG00000011635 I 0.000
tfcp2 Gasterosteus aculeatus ENSGACG00000010929 I 0.000
ubp1 Gasterosteus aculeatus ENSGACG00000005520 I 0.000
Gfo_R001211 Geospiza fortis Gfo_R001211 I 0.000
Gfo_R001955 Geospiza fortis Gfo_R001955 I 0.000
TFCP2 Homo sapiens ENSG00000135457 D 0.000
ENSSTOG00000012083 Ictidomys tridecemlineatus ENSSTOG00000012083 I 0.000
ENSLACG00000012609 Latimeria chalumnae ENSLACG00000012609 I 0.000
ENSLOCG00000002070 Lepisosteus oculatus ENSLOCG00000002070 I 0.000
ENSLOCG00000002718 Lepisosteus oculatus ENSLOCG00000002718 I 0.000
ENSP00000283629 Macaca fascicularis ENSP00000283629 I 0.000
TFCP2 Macaca mulatta ENSMMUG00000000152 I 0.000
TFCP2L1 Macaca mulatta ENSMMUG00000008829 I 0.000
UBP1 Macaca mulatta ENSMMUG00000016917 I 0.000
TFCP2L1 Meleagris gallopavo ENSMGAG00000011889 I 0.000
TFCP2L1 Monodelphis domestica ENSMODG00000000229 I 0.000
ENSMPUG00000001036 Mustela putorius furo ENSMPUG00000001036 I 0.000
ENSMPUG00000000711 Mustela putorius furo ENSMPUG00000000711 I 0.000
Myotis_brandtii_TFCP2_10023086 Myotis brandtii Myotis_brandtii_TFCP2_10023086 I 0.000
Myotis_brandtii_TFCP2L1_10019079 Myotis brandtii Myotis_brandtii_TFCP2L1_10019079 I 0.000
Myotis_brandtii_UBP1_10023937 Myotis brandtii Myotis_brandtii_UBP1_10023937 I 0.000
UBP1 Myotis lucifugus ENSMLUG00000010827 I 0.000
ENSNLEG00000017779 Nomascus leucogenys ENSNLEG00000017779 I 0.000
ENSNLEG00000004651 Nomascus leucogenys ENSNLEG00000004651 I 0.000
ENSONIG00000002320 Oreochromis niloticus ENSONIG00000002320 I 0.000
UBP1 Oryctolagus cuniculus ENSOCUG00000011063 I 0.000
tfcp2 Oryzias latipes ENSORLG00000015644 I 0.000
ubp1 Oryzias latipes ENSORLG00000011706 I 0.000
TFCP2 Otolemur garnettii ENSOGAG00000007969 I 0.000
ENSOARG00000013124 Ovis aries ENSOARG00000013124 I 0.000
ENSOARG00000017390 Ovis aries ENSOARG00000017390 I 0.000
UBP1 Pan troglodytes ENSPTRG00000014733 I 0.000
TFCP2 Pan troglodytes ENSPTRG00000004949 I 0.000
TFCP2L1 Pan troglodytes ENSPTRG00000012415 I 0.000
ENSPANG00000003702 Papio anubis ENSPANG00000003702 I 0.000
ENSPANG00000019744 Papio anubis ENSPANG00000019744 I 0.000
ENSPMAG00000003474 Petromyzon marinus ENSPMAG00000003474 I 0.000
ENSPMAG00000007229 Petromyzon marinus ENSPMAG00000007229 I 0.000
ENSPFOG00000008378 Poecilia formosa ENSPFOG00000008378 I 0.000
ENSPFOG00000014602 Poecilia formosa ENSPFOG00000014602 N 0.000
Pvit_07635 Pogona vitticeps Pvit_07635 I 0.000
ENSPPYG00000014030 Pongo abelii ENSPPYG00000014030 I 0.000
ENSPPYG00000004522 Pongo abelii ENSPPYG00000004522 I 0.000
UBP1 Pteropus vampyrus ENSPVAG00000004158 I 0.000
Ubp1 Rattus norvegicus ENSRNOG00000009729 I 0.000
ENSSHAG00000016282 Sarcophilus harrisii ENSSHAG00000016282 N 0.000
ENSSHAG00000013877 Sarcophilus harrisii ENSSHAG00000013877 I 0.000
ENSSHAG00000000901 Sarcophilus harrisii ENSSHAG00000000901 I 0.000
UBP1 Sorex araneus ENSSARG00000008670 I 0.000
UBP1 Sus scrofa ENSSSCG00000011235 I 0.000
ubp1 Takifugu rubripes ENSTRUG00000013570 I 0.000
pou6f1 Takifugu rubripes ENSTRUG00000014900 I 0.000
ENSTSYG00000013882 Tarsius syrichta ENSTSYG00000013882 I 0.000
ubp1 Tetraodon nigroviridis ENSTNIG00000016974 I 0.000
Tal_R012945 Tyto alba Tal_R012945 I 0.000
tfcp2l1.L Xenopus laevis XB-GENE-997202 I 0.000
ENSXMAG00000005202 Xiphophorus maculatus ENSXMAG00000005202 I 0.000
ENSXMAG00000003023 Xiphophorus maculatus ENSXMAG00000003023 I 0.000