Carubv10006809m.g (Capsella rubella)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 Carubv10006809m.g T007842_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
DREB1B
M06643_2.00 		Arabidopsis thaliana
DHBRCCGACRHN
NDYGTCGGYVDH		 Dap-seq
OMalley et al.(2016)
CBF1_col_a 		0.772 0.940
DREB1B
M06644_2.00 		Arabidopsis thaliana
NNNHBRCCGACAWNN
NNWTGTCGGYVDNNN		 Dap-seq
OMalley et al.(2016)
CBF1_colamp_a 		0.772 0.940
DREB1C
M01623_2.00 		Arabidopsis thaliana
RCCGACAT
ATGTCGGY		 PBM
Weirauch et al.(2014)
pTH8187 		0.732 0.960
DREB1C
M06639_2.00 		Arabidopsis thaliana
NNNHBRCCGACATNN
NNATGTCGGYVDNNN		 Dap-seq
OMalley et al.(2016)
CBF2_col_a 		0.732 0.960
DREB1C
M06640_2.00 		Arabidopsis thaliana
NYBRCCGACATVN
NBATGTCGGYVRN		 Dap-seq
OMalley et al.(2016)
CBF2_colamp_a 		0.732 0.960
DREB1D
M06678_2.00 		Arabidopsis thaliana
NHBRCCGACRTNN
NNAYGTCGGYVDN		 Dap-seq
OMalley et al.(2016)
CBF4_col_a 		0.698 0.880
DREB1D
M06679_2.00 		Arabidopsis thaliana
HYRCCGACATND
HNATGTCGGYRD		 Dap-seq
OMalley et al.(2016)
CBF4_colamp_a 		0.698 0.880
DREB1A
M01624_2.00 		Arabidopsis thaliana
NRCCGACNNN
NNNGTCGGYN		 PBM
Weirauch et al.(2014)
pTH8163 		0.697 0.900
DREB1A
M01625_2.00 		Arabidopsis thaliana
NNRCCGACNW
WNGTCGGYNN		 PBM
Weirauch et al.(2014)
pTH9718 		0.697 0.900
DREB1A
M06641_2.00 		Arabidopsis thaliana
HNYBRCCGACDWNN
NNWHGTCGGYVRND		 Dap-seq
OMalley et al.(2016)
CBF3_col_a 		0.697 0.900
DREB1A
M06642_2.00 		Arabidopsis thaliana
YBRCCGACATN
NATGTCGGYVR		 Dap-seq
OMalley et al.(2016)
CBF3_colamp_a 		0.697 0.900
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10006809m AP2 52 103

Links

Other AP2 family TFs
Other Capsella rubella TFs

27 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
nAv.1.0.1.g06570 Acanthocheilonema viteae nAv.1.0.1.g06570 I
ANCCAN_03591 Ancylostoma caninum ANCCAN_03591 N
ANCCEY_10263 Ancylostoma ceylanicum ANCCEY_10263 N
ACOC_0000564301 Angiostrongylus costaricensis ACOC_0000564301 N
ASIM_0001335601 Anisakis simplex ASIM_0001335601 I
ALUE_0000326401 Ascaris lumbricoides ALUE_0000326401 I
ASU_05094 Ascaris suum ASU_05094 I
BGLB003270 Biomphalaria glabrata BGLB003270 I
Bm7588 Brugia malayi Bm7588 I
BTMF_0000617301 Brugia timori BTMF_0000617301 I
CBN32559 Caenorhabditis brenneri CBN32559 I
CBG19808 Caenorhabditis briggsae CBG19808 I
ces-2 Caenorhabditis elegans WBGene00000469 D
CJA10655 Caenorhabditis japonica CJA10655 I
CRE13954 Caenorhabditis remanei CRE13954 I
CLEC000050 Cimex lectularius CLEC000050 N
CLEC001633 Cimex lectularius CLEC001633 N
CGI_10015382 Crassostrea gigas CGI_10015382 N
CGI_10024700 Crassostrea gigas CGI_10024700 N
DICVIV_06567 Dictyocaulus viviparus DICVIV_06567 I
nDi.2.2.2.g01315 Dirofilaria immitis nDi.2.2.2.g01315 I
nDi.2.2.2.g10294 Dirofilaria immitis nDi.2.2.2.g10294 I
DME_0000215901 Dracunculus medinensis DME_0000215901 I
EEL_0000071901 Elaeophora elaphi EEL_0000071901 I
GPUH_0000579801 Gongylonema pulchrum GPUH_0000579801 I
HPLM_0000323401 Haemonchus placei HPLM_0000323401 I
HelroG146802 Helobdella robusta HelroG146802 N
LDEC005996 Leptinotarsa decemlineata LDEC005996 N
nLs.2.1.2.g06633 Litomosoides sigmodontis nLs.2.1.2.g06633 I
LOAG_04491 Loa loa LOAG_04491 I
LotgiG89985 Lottia gigantea LotgiG89985 N
NECAME_03378 Necator americanus NECAME_03378 N
OFLC_0001455401 Onchocerca flexuosa OFLC_0001455401 I
nOo.2.0.1.g09202 Onchocerca ochengi nOo.2.0.1.g09202 I
WBGene00237430 Onchocerca volvulus WBGene00237430 I
PEQ_0001019701 Parascaris equorum PEQ_0001019701 I
PTRK_0001316500 Parastrongyloides trichosuri PTRK_0001316500 I
RPRC001027 Rhodnius prolixus RPRC001027 N
Sakowv30032301m.g Saccoglossus kowalevskii Sakowv30032301m.g N
L596_g21771 Steinernema carpocapsae L596_g21771 N
L596_g3194 Steinernema carpocapsae L596_g3194 I
L893_g26459 Steinernema glaseri L893_g26459 I
L898_g30246 Steinernema monticolum L898_g30246 I
L892_g28108 Steinernema scapterisci L892_g28108 N
SPU_014528 Strongylocentrotus purpuratus SPU_014528 N
SPU_021150 Strongylocentrotus purpuratus SPU_021150 I
SPAL_0001536200 Strongyloides papillosus SPAL_0001536200 I
SSTP_0000025200 Strongyloides stercoralis SSTP_0000025200 I
SMUV_0001027601 Syphacia muris SMUV_0001027601 I
EFV48635 Trichinella spiralis EFV48635 N
WUBG_01294 Wuchereria bancrofti WUBG_01294 I