Carubv10011394m.g (Capsella rubella)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 Carubv10011394m.g T007864_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ERF017
M06568_2.00 		Arabidopsis thaliana
NHNYCRCCGWCMWH
DWKGWCGGYGRNDN		 Dap-seq
OMalley et al.(2016)
At1g19210_col_a 		0.829 1.000
ERF017
M06569_2.00 		Arabidopsis thaliana
NNNHNNCRCCGWCMW
WKGWCGGYGNNDNNN		 Dap-seq
OMalley et al.(2016)
At1g19210_colamp_a 		0.829 1.000
ERF018
M00842_2.00 		Arabidopsis thaliana
HRCCGDCMN
NKGHCGGYD		 PBM
Franco-Zorrilla et al.(2014)
ORA47 		0.803 0.920
ERF018
M01610_2.00 		Arabidopsis thaliana
NRCCGNCHN
NDGNCGGYN		 PBM
Weirauch et al.(2014)
pTH7215 		0.803 0.920
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10011394m AP2 11 62

Links

Other AP2 family TFs
Other Capsella rubella TFs

157 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSAMEG00000007556 Ailuropoda melanoleuca ENSAMEG00000007556 N
Alligator_sinensis_CCG011037.1 Alligator sinensis Alligator_sinensis_CCG011037.1 N
ZBTB8A Anolis carolinensis ENSACAG00000004819 N
Afo_R013969 Aptenodytes forsteri Afo_R013969 N
ENSBTAP00000024222-D1 Bos grunniens ENSBTAP00000024222-D1 N
ZBTB8A Bos taurus ENSBTAG00000018199 N
Brh_R002265 Buceros rhinoceros Brh_R002265 N
ZBTB8A Callithrix jacchus ENSCJAG00000001003 N
Aan_R015482 Calypte anna Aan_R015482 N
ZBTB8A Canis familiaris ENSCAFG00000023779 N
ENSCPOG00000020832 Cavia porcellus ENSCPOG00000020832 N
ENSCSAG00000001058 Chlorocebus sabaeus ENSCSAG00000001058 N
ZBTB8A Choloepus hoffmanni ENSCHOG00000004051 N
ZBTB8A Dasypus novemcinctus ENSDNOG00000032935 N
Zbtb8a Dipodomys ordii ENSDORG00000007027 N
ZBTB8A Equus caballus ENSECAG00000023392 N
ZBTB8A Felis catus ENSFCAG00000027580 N
ENSFALG00000000603 Ficedula albicollis ENSFALG00000000603 N
ENSGALG00000003420 Gallus gallus ENSGALG00000003420 N
Gfo_R011646 Geospiza fortis Gfo_R011646 N
ZBTB8A Homo sapiens ENSG00000160062 N
ENSSTOG00000024103 Ictidomys tridecemlineatus ENSSTOG00000024103 N
ZBTB8A Loxodonta africana ENSLAFG00000031979 N
ENSP00000362609 Macaca fascicularis ENSP00000362609 N
ENSMEUG00000013710 Macropus eugenii ENSMEUG00000013710 N
ZBTB8A Meleagris gallopavo ENSMGAG00000004949 N
ZBTB8A Monodelphis domestica ENSMODG00000017424 N
ENSMPUG00000015223 Mustela putorius furo ENSMPUG00000015223 N
Zbtb8a Mus musculus ENSMUSG00000028807 N
Myotis_brandtii_ZBTB8A_10012393 Myotis brandtii Myotis_brandtii_ZBTB8A_10012393 N
ZBTB8A Myotis lucifugus ENSMLUG00000023002 N
ENSNLEG00000002769 Nomascus leucogenys ENSNLEG00000002769 N
ZBTB8A Ochotona princeps ENSOPRG00000018275 N
Ogr05994 Ophisaurus gracilis Ogr05994 N
ZBTB8A Ornithorhynchus anatinus ENSOANG00000001191 N
ZBTB8A Oryctolagus cuniculus ENSOCUG00000021621 N
ZBTB8A Otolemur garnettii ENSOGAG00000028328 N
ENSOARG00000020930 Ovis aries ENSOARG00000020930 N
ZBTB8A Pan troglodytes ENSPTRG00000034505 N
ENSPANG00000019096 Papio anubis ENSPANG00000019096 N
ENSPSIG00000008472 Pelodiscus sinensis ENSPSIG00000008472 N
Pvit_17720 Pogona vitticeps Pvit_17720 N
ENSPPYG00000001590 Pongo abelii ENSPPYG00000001590 N
ZBTB8A Procavia capensis ENSPCAG00000013857 N
Zbtb8a Rattus norvegicus ENSRNOG00000008300 N
ENSSHAG00000010423 Sarcophilus harrisii ENSSHAG00000010423 N
ZBTB8A Sus scrofa ENSSSCG00000021457 N
ZBTB8A Taeniopygia guttata ENSTGUG00000001373 N
ENSTSYG00000009437 Tarsius syrichta ENSTSYG00000009437 N
ZBTB8A Tursiops truncatus ENSTTRG00000014967 N
Tal_R009236 Tyto alba Tal_R009236 N
ZBTB8A Vicugna pacos ENSVPAG00000011873 N