Carubv10011394m.g (Capsella rubella)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 Carubv10011394m.g T007864_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ERF017
M06568_2.00 		Arabidopsis thaliana
NHNYCRCCGWCMWH
DWKGWCGGYGRNDN		 Dap-seq
OMalley et al.(2016)
At1g19210_col_a 		0.829 1.000
ERF017
M06569_2.00 		Arabidopsis thaliana
NNNHNNCRCCGWCMW
WKGWCGGYGNNDNNN		 Dap-seq
OMalley et al.(2016)
At1g19210_colamp_a 		0.829 1.000
ERF018
M00842_2.00 		Arabidopsis thaliana
HRCCGDCMN
NKGHCGGYD		 PBM
Franco-Zorrilla et al.(2014)
ORA47 		0.803 0.920
ERF018
M01610_2.00 		Arabidopsis thaliana
NRCCGNCHN
NDGNCGGYN		 PBM
Weirauch et al.(2014)
pTH7215 		0.803 0.920
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10011394m AP2 11 62

Links

Other AP2 family TFs
Other Capsella rubella TFs

157 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ERF017 Arabidopsis thaliana AT1G19210 D 0.829
fgenesh2_kg.1__2098__AT1G19210.1 Arabidopsis lyrata fgenesh2_kg.1__2098__AT1G19210.1 I 0.829
Cagra.1961s0079 Capsella grandiflora Cagra.1961s0079 I 0.829
POPTR_0006s23480 Populus trichocarpa POPTR_0006s23480 I 0.822
SapurV1A.0373s0040 Salix purpurea SapurV1A.0373s0040 I 0.822
SapurV1A.2229s0010 Salix purpurea SapurV1A.2229s0010 I 0.822
gene12919-v1.0-hybrid Fragaria vesca gene12919-v1.0-hybrid I 0.821
cassava10604.m1 Manihot esculenta cassava10604.m1 I 0.819
evm.TU.supercontig_266.5 Carica papaya evm.TU.supercontig_266.5 I 0.818
SapurV1A.0057s0300 Salix purpurea SapurV1A.0057s0300 I 0.818
Aquca_076_00039 Aquilegia coerulea Aquca_076_00039 I 0.812
VIT_11s0016g00660 Vitis vinifera VIT_11s0016g00660 I 0.811
Bo8g102870 Brassica oleracea Bo8g102870 I 0.810
Bra031069 Brassica rapa Bra031069 I 0.810
cassava20547.m1 Manihot esculenta cassava20547.m1 I 0.810
Bo8g068370 Brassica oleracea Bo8g068370 I 0.809
Bra016518 Brassica rapa Bra016518 I 0.809
ORA47 Vitis vinifera VIT_04s0008g02230 I 0.809
Thhalv10009812m.g Eutrema salsugineum Thhalv10009812m.g I 0.809
TCM_037415 Theobroma cacao TCM_037415 I 0.808
Gorai.001G019100 Gossypium raimondii Gorai.001G019100 I 0.808
POPTR_0018s08320 Populus trichocarpa POPTR_0018s08320 I 0.806
Bostr.7128s0526 Boechera stricta Bostr.7128s0526 I 0.805
ERF018 Arabidopsis thaliana AT1G74930 D 0.803
ORA47 Arabidopsis lyrata fgenesh2_kg.2__1761__AT1G74930.1 I 0.803
Bostr.3288s0141 Boechera stricta Bostr.3288s0141 I 0.803
Lus10009798.g Linum usitatissimum Lus10009798.g I 0.803
Lus10038082.g Linum usitatissimum Lus10038082.g I 0.803
mgf024162m Mimulus guttatus mgf024162m I 0.801
MTR_1g014800 Medicago truncatula MTR_1g014800 I 0.800
chr5.CM0040.40.nd Lotus japonicus chr5.CM0040.40.nd I 0.799
Bo6g119120 Brassica oleracea Bo6g119120 I 0.798
TCM_037486 Theobroma cacao TCM_037486 I 0.798
mgf021940m Mimulus guttatus mgf021940m I 0.798
Bra003780 Brassica rapa Bra003780 I 0.796
Bo6g086740 Brassica oleracea Bo6g086740 I 0.795
Bra015882 Brassica rapa Bra015882 I 0.795
POPTR_0006s14090 Populus trichocarpa POPTR_0006s14090 I 0.795
POPTR_0006s14100 Populus trichocarpa POPTR_0006s14100 I 0.795
cassava25057.valid.m1 Manihot esculenta cassava25057.valid.m1 I 0.795
Cagra.0402s0035 Capsella grandiflora Cagra.0402s0035 I 0.795
Carubv10020965m.g Capsella rubella Carubv10020965m.g I 0.795
MDP0000704216 Malus domestica MDP0000704216 I 0.795
Ciclev10010348m.g Citrus clementina Ciclev10010348m.g I 0.794
Gorai.004G285900 Gossypium raimondii Gorai.004G285900 I 0.793
MTR_1g014820 Medicago truncatula MTR_1g014820 I 0.792
MTR_1g014860 Medicago truncatula MTR_1g014860 I 0.792
PRUPE_ppa011336mg Prunus persica PRUPE_ppa011336mg I 0.792
Pm027117 Prunus mume Pm027117 I 0.792
29739.m003716 Ricinus communis 29739.m003716 I 0.792
Eucgr.C03297 Eucalyptus grandis Eucgr.C03297 I 0.792
MDP0000649022 Malus domestica MDP0000649022 I 0.790
GLYMA17G33535 Glycine max GLYMA17G33535 I 0.788
29739.m003647 Ricinus communis 29739.m003647 I 0.788
Eucgr.C00780 Eucalyptus grandis Eucgr.C00780 I 0.788
Gorai.001G016800 Gossypium raimondii Gorai.001G016800 I 0.788
mgf025452m Mimulus guttatus mgf025452m I 0.787
Ca_09124 Cicer arietinum Ca_09124 I 0.786
Ciclev10009540m.g Citrus clementina Ciclev10009540m.g I 0.786
orange1.1g029068m.g Citrus sinensis orange1.1g029068m.g I 0.786
SapurV1A.0521s0050 Salix purpurea SapurV1A.0521s0050 I 0.786
Ca_01683 Cicer arietinum Ca_01683 I 0.785
Gorai.010G091100 Gossypium raimondii Gorai.010G091100 I 0.785
GLYMA04G06095 Glycine max GLYMA04G06095 I 0.784
GLYMA06G06101 Glycine max GLYMA06G06101 I 0.784
Lus10033420.g Linum usitatissimum Lus10033420.g I 0.784
Lus10034885.g Linum usitatissimum Lus10034885.g I 0.784
Thhalv10019652m.g Eutrema salsugineum Thhalv10019652m.g I 0.784
AMTR_s00007p00268280 Amborella trichopoda AMTR_s00007p00268280 I 0.781
GLYMA14G12505 Glycine max GLYMA14G12505 I 0.780
GLYMA17G05240 Glycine max GLYMA17G05240 I 0.778
Bo2g023630 Brassica oleracea Bo2g023630 I 0.776
GLYMA13G17250 Glycine max GLYMA13G17250 I 0.776
PGSC0003DMG400002899 Solanum tuberosum PGSC0003DMG400002899 I 0.776
Solyc12g009240.1 Solanum lycopersicum Solyc12g009240.1 I 0.776
Bra025719 Brassica rapa Bra025719 I 0.775
Bra020162 Brassica rapa Bra020162 I 0.773
Si019636m.g Setaria italica Si019636m.g I 0.770
Cla007584 Citrullus lanatus Cla007584 I 0.770
Gorai.013G222700 Gossypium raimondii Gorai.013G222700 I 0.770
Pavir.Aa00296 Panicum virgatum Pavir.Aa00296 I 0.770
Pavir.J00593 Panicum virgatum Pavir.J00593 I 0.770
GRMZM2G097081 Zea mays GRMZM2G097081 I 0.766
Cla011318 Citrullus lanatus Cla011318 I 0.764
Cucsa.141980 Cucumis sativus Cucsa.141980 I 0.764
GLYMA09G08330 Glycine max GLYMA09G08330 I 0.762
Bo3g015600 Brassica oleracea Bo3g015600 I 0.761
Bra006599 Brassica rapa Bra006599 I 0.761
LPERR02G28660 Leersia perrieri LPERR02G28660 I 0.760
GLYMA15G19910 Glycine max GLYMA15G19910 I 0.759
Bo9g149820 Brassica oleracea Bo9g149820 I 0.758
Bra002377 Brassica rapa Bra002377 I 0.758
scaffold_602234.1 Arabidopsis lyrata scaffold_602234.1 I 0.758
Bostr.26527s0082 Boechera stricta Bostr.26527s0082 I 0.758
Carubv10001903m.g Capsella rubella Carubv10001903m.g I 0.758
MTR_2g043050 Medicago truncatula MTR_2g043050 I 0.756
ERF016 Arabidopsis thaliana AT5G21960 I 0.752
MTR_3g105480 Medicago truncatula MTR_3g105480 I 0.752
MTR_3g105510 Medicago truncatula MTR_3g105510 I 0.752
Thhalv10015465m.g Eutrema salsugineum Thhalv10015465m.g I 0.752
chr1.CM0133.1010.nc Lotus japonicus chr1.CM0133.1010.nc I 0.751
Cucsa.271180 Cucumis sativus Cucsa.271180 I 0.750
Traes_6DL_FA861D610 Triticum aestivum Traes_6DL_FA861D610 I 0.748
Eucgr.C03175 Eucalyptus grandis Eucgr.C03175 I 0.748
PK18548.1 Cannabis sativa PK18548.1 I 0.748
Ca_19295 Cicer arietinum Ca_19295 I 0.744
MTR_2g043030 Medicago truncatula MTR_2g043030 I 0.742
MTR_2g043040 Medicago truncatula MTR_2g043040 I 0.742
chr6.CM0420.30.nd Lotus japonicus chr6.CM0420.30.nd I 0.742
Ca_19297 Cicer arietinum Ca_19297 I 0.740
Ca_19296 Cicer arietinum Ca_19296 I 0.738
Si008104m.g Setaria italica Si008104m.g I 0.737
GSMUA_AchrUn_randomG02200_001 Musa acuminata GSMUA_AchrUn_randomG02200_001 I 0.736
Gorai.004G285200 Gossypium raimondii Gorai.004G285200 I 0.734
GSMUA_Achr5G05160_001 Musa acuminata GSMUA_Achr5G05160_001 I 0.731
PGSC0003DMG400030781 Solanum tuberosum PGSC0003DMG400030781 I 0.728
Solyc06g054630.1 Solanum lycopersicum Solyc06g054630.1 I 0.728
Cla022291 Citrullus lanatus Cla022291 I 0.728
Cucsa.055920 Cucumis sativus Cucsa.055920 I 0.728
MTR_1g014780 Medicago truncatula MTR_1g014780 I 0.726
BGIOSGA005486 Oryza indica BGIOSGA005486 I 0.724
OGLUM02G35980 Oryza glumaepatula OGLUM02G35980 I 0.724
OMERI01G37050 Oryza meridionalis OMERI01G37050 I 0.724
ONIVA02G36910 Oryza nivara ONIVA02G36910 I 0.724
OPUNC02G32160 Oryza punctata OPUNC02G32160 I 0.724
ORGLA02G0301600 Oryza glaberrima ORGLA02G0301600 I 0.724
ORUFI02G36340 Oryza rufipogon ORUFI02G36340 I 0.724
OS02G0781300 Oryza sativa OS02G0781300 I 0.724
Traes_6AL_E6DAE246D Triticum aestivum Traes_6AL_E6DAE246D I 0.718
MTR_2g043020 Medicago truncatula MTR_2g043020 I 0.710
GSMUA_Achr9G14360_001 Musa acuminata GSMUA_Achr9G14360_001 I 0.703
Aquca_076_00040 Aquilegia coerulea Aquca_076_00040 I 0.701
MTR_7g028925 Medicago truncatula MTR_7g028925 I 0.697
BGIOSGA028781 Oryza indica BGIOSGA028781 I 0.691
GRMZM2G163745 Zea mays GRMZM2G163745 I 0.691
LPERR08G14000 Leersia perrieri LPERR08G14000 I 0.691
OB08G24280 Oryza brachyantha OB08G24280 I 0.691
OBART08G16950 Oryza barthii OBART08G16950 I 0.691
OGLUM08G17690 Oryza glumaepatula OGLUM08G17690 I 0.691
ONIVA08G18470 Oryza nivara ONIVA08G18470 I 0.691
OPUNC08G14840 Oryza punctata OPUNC08G14840 I 0.691
ORUFI08G18850 Oryza rufipogon ORUFI08G18850 I 0.691
OS08G0454000 Oryza sativa OS08G0454000 I 0.691
Si015027m.g Setaria italica Si015027m.g I 0.691
Pavir.Fa00741 Panicum virgatum Pavir.Fa00741 I 0.691
Pavir.Fb01602 Panicum virgatum Pavir.Fb01602 I 0.691
BGIOSGA022471 Oryza indica BGIOSGA022471 I 0.688
OBART06G06190 Oryza barthii OBART06G06190 I 0.688
OGLUM06G06520 Oryza glumaepatula OGLUM06G06520 I 0.688
OMERI03G32210 Oryza meridionalis OMERI03G32210 I 0.688
ONIVA06G07190 Oryza nivara ONIVA06G07190 I 0.688
ORGLA06G0057200 Oryza glaberrima ORGLA06G0057200 I 0.688
ORUFI06G06480 Oryza rufipogon ORUFI06G06480 I 0.688
TRAES3BF084200010CFD_g Triticum aestivum TRAES3BF084200010CFD_g I 0.684
BRADI3G37544 Brachypodium distachyon BRADI3G37544 I 0.682
F775_23111 Aegilops tauschii F775_23111 I 0.681
Sb07g022265 Sorghum bicolor Sb07g022265 I 0.677