cassava10604.m1 (Manihot esculenta)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 cassava10604.m1 T006791_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ERF017
M06568_2.00 		Arabidopsis thaliana
NHNYCRCCGWCMWH
DWKGWCGGYGRNDN		 Dap-seq
OMalley et al.(2016)
At1g19210_col_a 		0.819 0.940
ERF017
M06569_2.00 		Arabidopsis thaliana
NNNHNNCRCCGWCMW
WKGWCGGYGNNDNNN		 Dap-seq
OMalley et al.(2016)
At1g19210_colamp_a 		0.819 0.940
ERF018
M00842_2.00 		Arabidopsis thaliana
HRCCGDCMN
NKGHCGGYD		 PBM
Franco-Zorrilla et al.(2014)
ORA47 		0.797 0.880
ERF018
M01610_2.00 		Arabidopsis thaliana
NRCCGNCHN
NDGNCGGYN		 PBM
Weirauch et al.(2014)
pTH7215 		0.797 0.880
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
cassava10604.m1 AP2 25 76

Links

Other AP2 family TFs
Other Manihot esculenta TFs

156 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
gene12919-v1.0-hybrid Fragaria vesca gene12919-v1.0-hybrid I 0.824
POPTR_0006s23480 Populus trichocarpa POPTR_0006s23480 I 0.820
SapurV1A.0373s0040 Salix purpurea SapurV1A.0373s0040 I 0.820
SapurV1A.2229s0010 Salix purpurea SapurV1A.2229s0010 I 0.820
ERF017 Arabidopsis thaliana AT1G19210 D 0.819
fgenesh2_kg.1__2098__AT1G19210.1 Arabidopsis lyrata fgenesh2_kg.1__2098__AT1G19210.1 I 0.819
cassava20547.m1 Manihot esculenta cassava20547.m1 I 0.819
Cagra.1961s0079 Capsella grandiflora Cagra.1961s0079 I 0.819
Carubv10011394m.g Capsella rubella Carubv10011394m.g I 0.819
SapurV1A.0057s0300 Salix purpurea SapurV1A.0057s0300 I 0.818
evm.TU.supercontig_266.5 Carica papaya evm.TU.supercontig_266.5 I 0.816
VIT_11s0016g00660 Vitis vinifera VIT_11s0016g00660 I 0.814
Aquca_076_00039 Aquilegia coerulea Aquca_076_00039 I 0.812
TCM_037415 Theobroma cacao TCM_037415 I 0.809
ORA47 Vitis vinifera VIT_04s0008g02230 I 0.805
Bo8g102870 Brassica oleracea Bo8g102870 I 0.804
Bra031069 Brassica rapa Bra031069 I 0.804
POPTR_0018s08320 Populus trichocarpa POPTR_0018s08320 I 0.804
Bo8g068370 Brassica oleracea Bo8g068370 I 0.803
Bra016518 Brassica rapa Bra016518 I 0.803
mgf024162m Mimulus guttatus mgf024162m I 0.803
Thhalv10009812m.g Eutrema salsugineum Thhalv10009812m.g I 0.803
chr5.CM0040.40.nd Lotus japonicus chr5.CM0040.40.nd I 0.802
Lus10009798.g Linum usitatissimum Lus10009798.g I 0.801
Lus10038082.g Linum usitatissimum Lus10038082.g I 0.801
Bra015882 Brassica rapa Bra015882 I 0.800
Ciclev10010348m.g Citrus clementina Ciclev10010348m.g I 0.800
MTR_1g014800 Medicago truncatula MTR_1g014800 I 0.798
MDP0000704216 Malus domestica MDP0000704216 I 0.798
ERF018 Arabidopsis thaliana AT1G74930 D 0.797
Bo6g119120 Brassica oleracea Bo6g119120 I 0.797
ORA47 Arabidopsis lyrata fgenesh2_kg.2__1761__AT1G74930.1 I 0.797
Bostr.3288s0141 Boechera stricta Bostr.3288s0141 I 0.797
Gorai.001G019100 Gossypium raimondii Gorai.001G019100 I 0.797
POPTR_0006s14100 Populus trichocarpa POPTR_0006s14100 I 0.796
cassava25057.valid.m1 Manihot esculenta cassava25057.valid.m1 I 0.796
PRUPE_ppa011336mg Prunus persica PRUPE_ppa011336mg I 0.795
Pm027117 Prunus mume Pm027117 I 0.795
29739.m003716 Ricinus communis 29739.m003716 I 0.795
mgf021940m Mimulus guttatus mgf021940m I 0.795
Bostr.7128s0526 Boechera stricta Bostr.7128s0526 I 0.794
TCM_037486 Theobroma cacao TCM_037486 I 0.793
MTR_1g014820 Medicago truncatula MTR_1g014820 I 0.790
MTR_1g014860 Medicago truncatula MTR_1g014860 I 0.790
Bo6g086740 Brassica oleracea Bo6g086740 I 0.789
Bra003780 Brassica rapa Bra003780 I 0.789
Ca_09124 Cicer arietinum Ca_09124 I 0.789
29739.m003647 Ricinus communis 29739.m003647 I 0.789
Cagra.0402s0035 Capsella grandiflora Cagra.0402s0035 I 0.789
Carubv10020965m.g Capsella rubella Carubv10020965m.g I 0.789
Eucgr.C00780 Eucalyptus grandis Eucgr.C00780 I 0.789
Eucgr.C03297 Eucalyptus grandis Eucgr.C03297 I 0.789
Gorai.001G016800 Gossypium raimondii Gorai.001G016800 I 0.789
Gorai.004G285900 Gossypium raimondii Gorai.004G285900 I 0.789
Ca_01683 Cicer arietinum Ca_01683 I 0.788
GLYMA04G06095 Glycine max GLYMA04G06095 I 0.787
GLYMA06G06101 Glycine max GLYMA06G06101 I 0.787
GLYMA17G33535 Glycine max GLYMA17G33535 I 0.787
Ciclev10009540m.g Citrus clementina Ciclev10009540m.g I 0.787
Gorai.010G091100 Gossypium raimondii Gorai.010G091100 I 0.787
orange1.1g029068m.g Citrus sinensis orange1.1g029068m.g I 0.787
SapurV1A.0521s0050 Salix purpurea SapurV1A.0521s0050 I 0.787
mgf025452m Mimulus guttatus mgf025452m I 0.786
MDP0000649022 Malus domestica MDP0000649022 I 0.786
POPTR_0006s14090 Populus trichocarpa POPTR_0006s14090 I 0.784
GLYMA13G17250 Glycine max GLYMA13G17250 I 0.782
Lus10033420.g Linum usitatissimum Lus10033420.g I 0.782
Lus10034885.g Linum usitatissimum Lus10034885.g I 0.782
GLYMA17G05240 Glycine max GLYMA17G05240 I 0.780
Bo2g023630 Brassica oleracea Bo2g023630 I 0.779
GLYMA14G12505 Glycine max GLYMA14G12505 I 0.779
Bra020162 Brassica rapa Bra020162 I 0.778
Thhalv10019652m.g Eutrema salsugineum Thhalv10019652m.g I 0.778
AMTR_s00007p00268280 Amborella trichopoda AMTR_s00007p00268280 I 0.777
PGSC0003DMG400002899 Solanum tuberosum PGSC0003DMG400002899 I 0.774
Solyc12g009240.1 Solanum lycopersicum Solyc12g009240.1 I 0.774
Bra025719 Brassica rapa Bra025719 I 0.769
GRMZM2G097081 Zea mays GRMZM2G097081 I 0.768
Cla007584 Citrullus lanatus Cla007584 I 0.768
Pavir.J00593 Panicum virgatum Pavir.J00593 I 0.768
Si019636m.g Setaria italica Si019636m.g I 0.767
Pavir.Aa00296 Panicum virgatum Pavir.Aa00296 I 0.767
Gorai.013G222700 Gossypium raimondii Gorai.013G222700 I 0.766
Cla011318 Citrullus lanatus Cla011318 I 0.765
Cucsa.141980 Cucumis sativus Cucsa.141980 I 0.765
Bo3g015600 Brassica oleracea Bo3g015600 I 0.764
Bra006599 Brassica rapa Bra006599 I 0.764
Bo9g149820 Brassica oleracea Bo9g149820 I 0.763
Bra002377 Brassica rapa Bra002377 I 0.763
scaffold_602234.1 Arabidopsis lyrata scaffold_602234.1 I 0.763
Bostr.26527s0082 Boechera stricta Bostr.26527s0082 I 0.763
Carubv10001903m.g Capsella rubella Carubv10001903m.g I 0.763
ERF016 Arabidopsis thaliana AT5G21960 I 0.757
LPERR02G28660 Leersia perrieri LPERR02G28660 I 0.757
GLYMA09G08330 Glycine max GLYMA09G08330 I 0.756
MTR_3g105480 Medicago truncatula MTR_3g105480 I 0.755
MTR_3g105510 Medicago truncatula MTR_3g105510 I 0.755
Thhalv10015465m.g Eutrema salsugineum Thhalv10015465m.g I 0.754
GLYMA15G19910 Glycine max GLYMA15G19910 I 0.753
chr1.CM0133.1010.nc Lotus japonicus chr1.CM0133.1010.nc I 0.753
MTR_2g043050 Medicago truncatula MTR_2g043050 I 0.750
Eucgr.C03175 Eucalyptus grandis Eucgr.C03175 I 0.749
Cucsa.271180 Cucumis sativus Cucsa.271180 I 0.747
Traes_6DL_FA861D610 Triticum aestivum Traes_6DL_FA861D610 I 0.746
PK18548.1 Cannabis sativa PK18548.1 I 0.746
GSMUA_AchrUn_randomG02200_001 Musa acuminata GSMUA_AchrUn_randomG02200_001 I 0.739
Ca_19295 Cicer arietinum Ca_19295 I 0.738
chr6.CM0420.30.nd Lotus japonicus chr6.CM0420.30.nd I 0.737
MTR_2g043030 Medicago truncatula MTR_2g043030 I 0.736
MTR_2g043040 Medicago truncatula MTR_2g043040 I 0.736
Gorai.004G285200 Gossypium raimondii Gorai.004G285200 I 0.736
Si008104m.g Setaria italica Si008104m.g I 0.734
Ca_19297 Cicer arietinum Ca_19297 I 0.734
GSMUA_Achr5G05160_001 Musa acuminata GSMUA_Achr5G05160_001 I 0.733
Ca_19296 Cicer arietinum Ca_19296 I 0.732
PGSC0003DMG400030781 Solanum tuberosum PGSC0003DMG400030781 I 0.729
Solyc06g054630.1 Solanum lycopersicum Solyc06g054630.1 I 0.729
Cla022291 Citrullus lanatus Cla022291 I 0.725
Cucsa.055920 Cucumis sativus Cucsa.055920 I 0.725
MTR_1g014780 Medicago truncatula MTR_1g014780 I 0.724
BGIOSGA005486 Oryza indica BGIOSGA005486 I 0.721
OGLUM02G35980 Oryza glumaepatula OGLUM02G35980 I 0.721
OMERI01G37050 Oryza meridionalis OMERI01G37050 I 0.721
ONIVA02G36910 Oryza nivara ONIVA02G36910 I 0.721
OPUNC02G32160 Oryza punctata OPUNC02G32160 I 0.721
ORGLA02G0301600 Oryza glaberrima ORGLA02G0301600 I 0.721
ORUFI02G36340 Oryza rufipogon ORUFI02G36340 I 0.721
OS02G0781300 Oryza sativa OS02G0781300 I 0.721
Traes_6AL_E6DAE246D Triticum aestivum Traes_6AL_E6DAE246D I 0.715
GSMUA_Achr9G14360_001 Musa acuminata GSMUA_Achr9G14360_001 I 0.706
MTR_2g043020 Medicago truncatula MTR_2g043020 I 0.704
Aquca_076_00040 Aquilegia coerulea Aquca_076_00040 I 0.699
MTR_7g028925 Medicago truncatula MTR_7g028925 I 0.695
BGIOSGA028781 Oryza indica BGIOSGA028781 I 0.686
GRMZM2G163745 Zea mays GRMZM2G163745 I 0.686
LPERR08G14000 Leersia perrieri LPERR08G14000 I 0.686
OB08G24280 Oryza brachyantha OB08G24280 I 0.686
OBART08G16950 Oryza barthii OBART08G16950 I 0.686
OGLUM08G17690 Oryza glumaepatula OGLUM08G17690 I 0.686
ONIVA08G18470 Oryza nivara ONIVA08G18470 I 0.686
OPUNC08G14840 Oryza punctata OPUNC08G14840 I 0.686
ORUFI08G18850 Oryza rufipogon ORUFI08G18850 I 0.686
OS08G0454000 Oryza sativa OS08G0454000 I 0.686
Si015027m.g Setaria italica Si015027m.g I 0.686
Pavir.Fa00741 Panicum virgatum Pavir.Fa00741 I 0.686
Pavir.Fb01602 Panicum virgatum Pavir.Fb01602 I 0.686
BGIOSGA022471 Oryza indica BGIOSGA022471 I 0.683
OBART06G06190 Oryza barthii OBART06G06190 I 0.683
OGLUM06G06520 Oryza glumaepatula OGLUM06G06520 I 0.683
OMERI03G32210 Oryza meridionalis OMERI03G32210 I 0.683
ONIVA06G07190 Oryza nivara ONIVA06G07190 I 0.683
ORGLA06G0057200 Oryza glaberrima ORGLA06G0057200 I 0.683
ORUFI06G06480 Oryza rufipogon ORUFI06G06480 I 0.683
TRAES3BF084200010CFD_g Triticum aestivum TRAES3BF084200010CFD_g I 0.679
BRADI3G37544 Brachypodium distachyon BRADI3G37544 I 0.677
F775_23111 Aegilops tauschii F775_23111 I 0.677