Pavir.Aa00296 (Panicum virgatum)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 Pavir.Aa00296 T009320_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ERF017
M06568_2.00 		Arabidopsis thaliana
NHNYCRCCGWCMWH
DWKGWCGGYGRNDN		 Dap-seq
OMalley et al.(2016)
At1g19210_col_a 		0.770 0.880
ERF017
M06569_2.00 		Arabidopsis thaliana
NNNHNNCRCCGWCMW
WKGWCGGYGNNDNNN		 Dap-seq
OMalley et al.(2016)
At1g19210_colamp_a 		0.770 0.880
ERF018
M00842_2.00 		Arabidopsis thaliana
HRCCGDCMN
NKGHCGGYD		 PBM
Franco-Zorrilla et al.(2014)
ORA47 		0.767 0.860
ERF018
M01610_2.00 		Arabidopsis thaliana
NRCCGNCHN
NDGNCGGYN		 PBM
Weirauch et al.(2014)
pTH7215 		0.767 0.860
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Aa00296.1.p AP2 13 64

Links

Other AP2 family TFs
Other Panicum virgatum TFs

156 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Si019636m.g Setaria italica Si019636m.g I 0.819
Pavir.J00593 Panicum virgatum Pavir.J00593 I 0.810
GRMZM2G097081 Zea mays GRMZM2G097081 I 0.802
Traes_6DL_FA861D610 Triticum aestivum Traes_6DL_FA861D610 I 0.796
MDP0000649022 Malus domestica MDP0000649022 I 0.784
Lus10038082.g Linum usitatissimum Lus10038082.g I 0.782
Lus10009798.g Linum usitatissimum Lus10009798.g I 0.782
evm.TU.supercontig_266.5 Carica papaya evm.TU.supercontig_266.5 I 0.779
Lus10034885.g Linum usitatissimum Lus10034885.g I 0.776
Lus10033420.g Linum usitatissimum Lus10033420.g I 0.776
Bra016518 Brassica rapa Bra016518 I 0.775
Bo8g068370 Brassica oleracea Bo8g068370 I 0.775
TCM_037415 Theobroma cacao TCM_037415 I 0.774
cassava25057.valid.m1 Manihot esculenta cassava25057.valid.m1 I 0.774
POPTR_0006s14100 Populus trichocarpa POPTR_0006s14100 I 0.774
mgf021940m Mimulus guttatus mgf021940m I 0.773
Pm027117 Prunus mume Pm027117 I 0.772
29739.m003716 Ricinus communis 29739.m003716 I 0.772
PRUPE_ppa011336mg Prunus persica PRUPE_ppa011336mg I 0.772
Bra031069 Brassica rapa Bra031069 I 0.771
Gorai.004G285900 Gossypium raimondii Gorai.004G285900 I 0.771
Bo8g102870 Brassica oleracea Bo8g102870 I 0.771
SapurV1A.2229s0010 Salix purpurea SapurV1A.2229s0010 I 0.771
POPTR_0006s23480 Populus trichocarpa POPTR_0006s23480 I 0.771
SapurV1A.0373s0040 Salix purpurea SapurV1A.0373s0040 I 0.771
Cagra.1961s0079 Capsella grandiflora Cagra.1961s0079 I 0.770
gene12919-v1.0-hybrid Fragaria vesca gene12919-v1.0-hybrid I 0.770
Eucgr.C00780 Eucalyptus grandis Eucgr.C00780 I 0.770
ORA47 Vitis vinifera VIT_04s0008g02230 I 0.770
Thhalv10009812m.g Eutrema salsugineum Thhalv10009812m.g I 0.770
ERF017 Arabidopsis thaliana AT1G19210 D 0.770
Carubv10011394m.g Capsella rubella Carubv10011394m.g I 0.770
fgenesh2_kg.1__2098__AT1G19210.1 Arabidopsis lyrata fgenesh2_kg.1__2098__AT1G19210.1 I 0.770
Gorai.001G019100 Gossypium raimondii Gorai.001G019100 I 0.770
Eucgr.C03297 Eucalyptus grandis Eucgr.C03297 I 0.769
SapurV1A.0057s0300 Salix purpurea SapurV1A.0057s0300 I 0.769
ERF018 Arabidopsis thaliana AT1G74930 D 0.767
29739.m003647 Ricinus communis 29739.m003647 I 0.767
cassava10604.m1 Manihot esculenta cassava10604.m1 I 0.767
Bostr.3288s0141 Boechera stricta Bostr.3288s0141 I 0.767
ORA47 Arabidopsis lyrata fgenesh2_kg.2__1761__AT1G74930.1 I 0.767
POPTR_0006s14090 Populus trichocarpa POPTR_0006s14090 I 0.767
Cla007584 Citrullus lanatus Cla007584 I 0.766
mgf024162m Mimulus guttatus mgf024162m I 0.766
SapurV1A.0521s0050 Salix purpurea SapurV1A.0521s0050 I 0.765
Gorai.010G091100 Gossypium raimondii Gorai.010G091100 I 0.764
LPERR02G28660 Leersia perrieri LPERR02G28660 I 0.764
Bo6g119120 Brassica oleracea Bo6g119120 I 0.763
MTR_1g014800 Medicago truncatula MTR_1g014800 I 0.762
Aquca_076_00039 Aquilegia coerulea Aquca_076_00039 I 0.762
Bra003780 Brassica rapa Bra003780 I 0.760
TCM_037486 Theobroma cacao TCM_037486 I 0.760
VIT_11s0016g00660 Vitis vinifera VIT_11s0016g00660 I 0.759
Bo6g086740 Brassica oleracea Bo6g086740 I 0.759
Carubv10020965m.g Capsella rubella Carubv10020965m.g I 0.759
Cagra.0402s0035 Capsella grandiflora Cagra.0402s0035 I 0.759
Bra015882 Brassica rapa Bra015882 I 0.758
cassava20547.m1 Manihot esculenta cassava20547.m1 I 0.758
MDP0000704216 Malus domestica MDP0000704216 I 0.757
Ciclev10010348m.g Citrus clementina Ciclev10010348m.g I 0.756
AMTR_s00007p00268280 Amborella trichopoda AMTR_s00007p00268280 I 0.755
POPTR_0018s08320 Populus trichocarpa POPTR_0018s08320 I 0.755
MTR_1g014860 Medicago truncatula MTR_1g014860 I 0.755
MTR_1g014820 Medicago truncatula MTR_1g014820 I 0.755
GLYMA06G06101 Glycine max GLYMA06G06101 I 0.754
GLYMA04G06095 Glycine max GLYMA04G06095 I 0.754
Ca_01683 Cicer arietinum Ca_01683 I 0.752
mgf025452m Mimulus guttatus mgf025452m I 0.750
Ca_09124 Cicer arietinum Ca_09124 I 0.750
chr5.CM0040.40.nd Lotus japonicus chr5.CM0040.40.nd I 0.750
Gorai.001G016800 Gossypium raimondii Gorai.001G016800 I 0.748
Thhalv10019652m.g Eutrema salsugineum Thhalv10019652m.g I 0.748
orange1.1g029068m.g Citrus sinensis orange1.1g029068m.g I 0.747
Ciclev10009540m.g Citrus clementina Ciclev10009540m.g I 0.747
GSMUA_Achr5G05160_001 Musa acuminata GSMUA_Achr5G05160_001 I 0.746
OGLUM02G35980 Oryza glumaepatula OGLUM02G35980 I 0.746
Bostr.7128s0526 Boechera stricta Bostr.7128s0526 I 0.746
ONIVA02G36910 Oryza nivara ONIVA02G36910 I 0.746
OS02G0781300 Oryza sativa OS02G0781300 I 0.746
OMERI01G37050 Oryza meridionalis OMERI01G37050 I 0.746
ORUFI02G36340 Oryza rufipogon ORUFI02G36340 I 0.746
ORGLA02G0301600 Oryza glaberrima ORGLA02G0301600 I 0.746
OPUNC02G32160 Oryza punctata OPUNC02G32160 I 0.746
BGIOSGA005486 Oryza indica BGIOSGA005486 I 0.746
Gorai.013G222700 Gossypium raimondii Gorai.013G222700 I 0.745
Cucsa.271180 Cucumis sativus Cucsa.271180 I 0.744
GLYMA17G05240 Glycine max GLYMA17G05240 I 0.744
Cla011318 Citrullus lanatus Cla011318 I 0.743
GLYMA09G08330 Glycine max GLYMA09G08330 I 0.743
Cucsa.141980 Cucumis sativus Cucsa.141980 I 0.743
GLYMA13G17250 Glycine max GLYMA13G17250 I 0.742
Si008104m.g Setaria italica Si008104m.g I 0.740
GLYMA15G19910 Glycine max GLYMA15G19910 I 0.740
GLYMA17G33535 Glycine max GLYMA17G33535 I 0.738
Carubv10001903m.g Capsella rubella Carubv10001903m.g I 0.737
Solyc12g009240.1 Solanum lycopersicum Solyc12g009240.1 I 0.737
MTR_2g043050 Medicago truncatula MTR_2g043050 I 0.737
scaffold_602234.1 Arabidopsis lyrata scaffold_602234.1 I 0.737
Bo9g149820 Brassica oleracea Bo9g149820 I 0.737
Bostr.26527s0082 Boechera stricta Bostr.26527s0082 I 0.737
PGSC0003DMG400002899 Solanum tuberosum PGSC0003DMG400002899 I 0.737
Bra002377 Brassica rapa Bra002377 I 0.737
Bra025719 Brassica rapa Bra025719 I 0.735
Traes_6AL_E6DAE246D Triticum aestivum Traes_6AL_E6DAE246D I 0.734
Bra020162 Brassica rapa Bra020162 I 0.733
Thhalv10015465m.g Eutrema salsugineum Thhalv10015465m.g I 0.732
ERF016 Arabidopsis thaliana AT5G21960 I 0.731
GLYMA14G12505 Glycine max GLYMA14G12505 I 0.731
PK18548.1 Cannabis sativa PK18548.1 I 0.730
Bo3g015600 Brassica oleracea Bo3g015600 I 0.729
Bra006599 Brassica rapa Bra006599 I 0.729
GSMUA_AchrUn_randomG02200_001 Musa acuminata GSMUA_AchrUn_randomG02200_001 I 0.729
Bo2g023630 Brassica oleracea Bo2g023630 I 0.725
Ca_19295 Cicer arietinum Ca_19295 I 0.725
Solyc06g054630.1 Solanum lycopersicum Solyc06g054630.1 I 0.723
MTR_2g043030 Medicago truncatula MTR_2g043030 I 0.723
Ca_19297 Cicer arietinum Ca_19297 I 0.723
PGSC0003DMG400030781 Solanum tuberosum PGSC0003DMG400030781 I 0.723
MTR_2g043040 Medicago truncatula MTR_2g043040 I 0.723
MTR_3g105510 Medicago truncatula MTR_3g105510 I 0.721
MTR_3g105480 Medicago truncatula MTR_3g105480 I 0.721
Ca_19296 Cicer arietinum Ca_19296 I 0.720
chr1.CM0133.1010.nc Lotus japonicus chr1.CM0133.1010.nc I 0.720
Cla022291 Citrullus lanatus Cla022291 I 0.720
Cucsa.055920 Cucumis sativus Cucsa.055920 I 0.720
Eucgr.C03175 Eucalyptus grandis Eucgr.C03175 I 0.714
GSMUA_Achr9G14360_001 Musa acuminata GSMUA_Achr9G14360_001 I 0.708
chr6.CM0420.30.nd Lotus japonicus chr6.CM0420.30.nd I 0.706
OS08G0454000 Oryza sativa OS08G0454000 I 0.705
OPUNC08G14840 Oryza punctata OPUNC08G14840 I 0.705
BGIOSGA028781 Oryza indica BGIOSGA028781 I 0.705
ORUFI08G18850 Oryza rufipogon ORUFI08G18850 I 0.705
Pavir.Fa00741 Panicum virgatum Pavir.Fa00741 I 0.705
Pavir.Fb01602 Panicum virgatum Pavir.Fb01602 I 0.705
OGLUM08G17690 Oryza glumaepatula OGLUM08G17690 I 0.705
Si015027m.g Setaria italica Si015027m.g I 0.705
OB08G24280 Oryza brachyantha OB08G24280 I 0.705
ONIVA08G18470 Oryza nivara ONIVA08G18470 I 0.705
OBART08G16950 Oryza barthii OBART08G16950 I 0.705
GRMZM2G163745 Zea mays GRMZM2G163745 I 0.705
LPERR08G14000 Leersia perrieri LPERR08G14000 I 0.705
TRAES3BF084200010CFD_g Triticum aestivum TRAES3BF084200010CFD_g I 0.698
BRADI3G37544 Brachypodium distachyon BRADI3G37544 I 0.696
F775_23111 Aegilops tauschii F775_23111 I 0.696
Gorai.004G285200 Gossypium raimondii Gorai.004G285200 I 0.695
ONIVA06G07190 Oryza nivara ONIVA06G07190 I 0.691
ORGLA06G0057200 Oryza glaberrima ORGLA06G0057200 I 0.691
OGLUM06G06520 Oryza glumaepatula OGLUM06G06520 I 0.691
Sb07g022265 Sorghum bicolor Sb07g022265 I 0.691
OBART06G06190 Oryza barthii OBART06G06190 I 0.691
MTR_2g043020 Medicago truncatula MTR_2g043020 I 0.691
OMERI03G32210 Oryza meridionalis OMERI03G32210 I 0.691
ORUFI06G06480 Oryza rufipogon ORUFI06G06480 I 0.690
BGIOSGA022471 Oryza indica BGIOSGA022471 I 0.690
MTR_1g014780 Medicago truncatula MTR_1g014780 I 0.689
AMTR_s00007p00268460 Amborella trichopoda AMTR_s00007p00268460 I 0.680