orange1.1g044828m.g (Citrus sinensis)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 orange1.1g044828m.g T009297_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PLT1
M06622_2.00 		Arabidopsis thaliana
DDCACGNWWHYCRAGRHNN
NNDYCTYGRDWWNCGTGHH		 Dap-seq
OMalley et al.(2016)
PLT1_col_a 		0.933 0.933
PLT1
M06623_2.00 		Arabidopsis thaliana
DYDCRNWTYYCRAG
CTYGRRAWNYGHRH		 Dap-seq
OMalley et al.(2016)
PLT1_colamp_a 		0.933 0.933
Q6SA75_TOBAC
M09733_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ANTL_01 		0.890 0.876
Q6SA75_TOBAC
M09734_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ANTL_02 		0.890 0.876
ANT
M02647_2.00 		Arabidopsis thaliana
DNRCACRNWTCCCVADGYNHW
WDNRCHTBGGGAWNYGTGYNH		 SELEX
Mathelier et al.(2014)
MA0571.1 		0.887 0.876
ANT
M09705_2.00 		Arabidopsis thaliana
CACRNWTCCCRAKG
CMTYGGGAWNYGTG		 Transfac
Matys et al.(2006)
P$ANT_01 		0.887 0.876
AIL7
M06688_2.00 		Arabidopsis thaliana
CRNWTHYCRAG
CTYGRDAWNYG		 Dap-seq
OMalley et al.(2016)
AIL7_col_a 		0.851 0.848
AIL7
M06689_2.00 		Arabidopsis thaliana
DCRNWTHYCRAG
CTYGRDAWNYGH		 Dap-seq
OMalley et al.(2016)
AIL7_colamp_a 		0.851 0.848
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
orange1.1g044828m AP2 239 299
orange1.1g044828m AP2 341 393

Links

Other AP2 family TFs
Other Citrus sinensis TFs

626 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
nAv.1.0.1.g03797 Acanthocheilonema viteae nAv.1.0.1.g03797 I 0.000
ANCCAN_24528 Ancylostoma caninum ANCCAN_24528 I 0.000
ANCCEY_05532 Ancylostoma ceylanicum ANCCEY_05532 I 0.000
ANCDUO_15498 Ancylostoma duodenale ANCDUO_15498 I 0.000
ASIM_0001463201 Anisakis simplex ASIM_0001463201 I 0.000
ASU_10535 Ascaris suum ASU_10535 I 0.000
Bm3354 Brugia malayi Bm3354 I 0.000
BXY_0383300 Bursaphelenchus xylophilus BXY_0383300 I 0.000
CBN13459 Caenorhabditis brenneri CBN13459 I 0.000
CBG18919 Caenorhabditis briggsae CBG18919 I 0.000
bcl-11 Caenorhabditis elegans WBGene00017430 D 0.000
CJA41396 Caenorhabditis japonica CJA41396 I 0.000
CRE30875 Caenorhabditis remanei CRE30875 I 0.000
DICVIV_00143 Dictyocaulus viviparus DICVIV_00143 I 0.000
nDi.2.2.2.g00707 Dirofilaria immitis nDi.2.2.2.g00707 I 0.000
DME_0000006201 Dracunculus medinensis DME_0000006201 I 0.000
EVEC_0001125701 Enterobius vermicularis EVEC_0001125701 I 0.000
GPLIN_001288500 Globodera pallida GPLIN_001288500 I 0.000
HCOI01698200 Haemonchus contortus HCOI01698200 I 0.000
HCOI00904800 Haemonchus contortus HCOI00904800 I 0.000
HPLM_0001331501 Haemonchus placei HPLM_0001331501 I 0.000
nLs.2.1.2.g09142 Litomosoides sigmodontis nLs.2.1.2.g09142 I 0.000
LOAG_18740 Loa loa LOAG_18740 I 0.000
MhA1_Contig454.frz3.fgene1 Meloidogyne hapla MhA1_Contig454.frz3.fgene1 I 0.000
Minc07594 Meloidogyne incognita Minc07594 I 0.000
NECAME_02245 Necator americanus NECAME_02245 I 0.000
OFLC_0000354401 Onchocerca flexuosa OFLC_0000354401 I 0.000
nOo.2.0.1.g03888 Onchocerca ochengi nOo.2.0.1.g03888 I 0.000
WBGene00244008 Onchocerca volvulus WBGene00244008 I 0.000
PTRK_0001160400 Parastrongyloides trichosuri PTRK_0001160400 I 0.000
scaffold248-EXSNAP2012.2 Pristionchus exspectatus scaffold248-EXSNAP2012.2 I 0.000
PPA20237 Pristionchus pacificus PPA20237 I 0.000
RSKR_0000889800 Rhabditophanes kr3021 RSKR_0000889800 I 0.000
SBAD_0000338201 Soboliphyme baturini SBAD_0000338201 I 0.000
L596_g14520 Steinernema carpocapsae L596_g14520 I 0.000
L889_g19350 Steinernema feltiae L889_g19350 I 0.000
L898_g13372 Steinernema monticolum L898_g13372 I 0.000
L892_g10848 Steinernema scapterisci L892_g10848 I 0.000
SPAL_0001358300 Strongyloides papillosus SPAL_0001358300 I 0.000
SSTP_0000584500 Strongyloides stercoralis SSTP_0000584500 I 0.000
SVE_0953600 Strongyloides venezuelensis SVE_0953600 I 0.000
SMUV_0000624601 Syphacia muris SMUV_0000624601 I 0.000
TELCIR_24378 Teladorsagia circumcincta TELCIR_24378 I 0.000
TCNE_0001279201 Toxocara canis TCNE_0001279201 I 0.000
D917_09068 Trichinella nativa D917_09068 I 0.000
EFV59674 Trichinella spiralis EFV59674 I 0.000
TMUE_s0041001100 Trichuris muris TMUE_s0041001100 I 0.000
D918_08675 Trichuris suis D918_08675 I 0.000
WUBG_02612 Wuchereria bancrofti WUBG_02612 I 0.000