Pavir.Cb01298 (Panicum virgatum)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 Pavir.Cb01298 T009394_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Q1ESI9_MAIZE
M09714_2.00 		Zea mays Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DREB2A_02 		0.834 0.960
Q84ND8_HORVU
M09719_2.00 		Hordeum vulgare Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DRF11_01 		0.726 0.900
Q84JE9_HORVU
M09718_2.00 		Hordeum vulgare Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DRF13_01 		0.726 0.900
PK07402.1
M01097_2.00 		Cannabis sativa
NVRCCGMCH
DGKCGGYBN		 PBM
Lambert et al.(2019)
pTH11436 		0.712 0.840
Q8H769_WHEAT
M09721_2.00 		Triticum aestivum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DREB1_01 		0.699 0.820
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Cb01298.1.p AP2 82 133
Pavir.Cb01298.2.p AP2 12 63
Pavir.Cb01298.3.p AP2 12 63
Pavir.Cb01298.4.p AP2 81 132
Pavir.Cb01298.5.p AP2 12 63

Links

Other AP2 family TFs
Other Panicum virgatum TFs

105 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ACRE_065310 Acremonium chrysogenum ACRE_065310 I 0.000
M437DRAFT_58098 Aureobasidium melanogenum M437DRAFT_58098 N 0.000
M438DRAFT_343903 Aureobasidium pullulans M438DRAFT_343903 N 0.000
AUEXF2481DRAFT_2227 Aureobasidium subglaciale AUEXF2481DRAFT_2227 N 0.000
COCSADRAFT_146273 Bipolaris sorokiniana COCSADRAFT_146273 I 0.000
Bcin07g03570 Botrytis cinerea Bcin07g03570 N 0.000
GLRG_07219 Colletotrichum graminicola GLRG_07219 I 0.000
CH063_07756 Colletotrichum higginsianum CH063_07756 I 0.000
CSUB01_05661 Colletotrichum sublineola CSUB01_05661 I 0.000
estExt_Genewise1.C_32477 Cryphonectria parasitica estExt_Genewise1.C_32477 I 0.000
DOTSEDRAFT_166261 Dothistroma septosporum DOTSEDRAFT_166261 N 0.000
GGTG_04125 Gaeumannomyces graminis GGTG_04125 I 0.000
LEMA_P116160.1 Leptosphaeria maculans LEMA_P116160.1 N 0.000
OIDMADRAFT_108168 Oidiodendron maius OIDMADRAFT_108168 I 0.000
GMDG_01402 Pseudogymnoascus destructans GMDG_01402 I 0.000
V499_08858 Pseudogymnoascus pannorum V499_08858 I 0.000
SBOR_0518 Sclerotinia borealis SBOR_0518 I 0.000
SS1G_01905 Sclerotinia sclerotiorum SS1G_01905 I 0.000
SEPMUDRAFT_161432 Sphaerulina musiva SEPMUDRAFT_161432 I 0.000
S40288_04589 Stachybotrys chartarum S40288_04589 I 0.000
S40285_08437 Stachybotrys chlorohalonata S40285_08437 I 0.000
SNOG_13376 Stagonospora nodorum SNOG_13376 I 0.000
VDBG_01253 Verticillium albo atrum VDBG_01253 I 0.000
VDBG_01253 Verticillium alfalfae VDBG_01253 I 0.000
VDAG_08009 Verticillium dahliae VDAG_08009 I 0.000