CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

Pavir.J15316 *(Panicum virgatum)* AP2
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source
PF00847 (AP2)	IPR001471	Pavir.J15316	T009577_2.00	JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
A4F248_TOBAC M09725_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$WRAF1_01	0.751	0.820
A4F249_TOBAC M09726_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$WRAF2_01	0.746	0.800
ERF113 M01629_2.00	Arabidopsis thaliana	NNGCCGHHNN	NNDDCGGCNN	PBM Weirauch et al.(2014) pTH8097	0.714	0.780
ERF14 M01045_2.00	Arabidopsis thaliana	NVGCCGNCN	NGNCGGCBN	PBM Sullivan et al.(2014) pTH9793	0.704	0.740
ERF106 M01628_2.00	Arabidopsis thaliana	NNNVCRVCN	NGBYGBNNN	PBM Weirauch et al.(2014) pTH7426	0.703	0.700
ERF109 M00849_2.00	Arabidopsis thaliana	NGCCGNHNN	NNDNCGGCN	PBM Franco-Zorrilla et al.(2014) RRTF1	0.700	0.740
ERF109 M06653_2.00	Arabidopsis thaliana	CKSCGCCGYHWHHNN	NNDDWDRCGGCGSMG	Dap-seq OMalley et al.(2016) RRTF1_col_a	0.700	0.740
ERF109 M06654_2.00	Arabidopsis thaliana	HNNHDSCGCCGYHWTHNNN	NNNDAWDRCGGCGSHDNND	Dap-seq OMalley et al.(2016) RRTF1_colamp_a	0.700	0.740
ERF10 M06562_2.00	Arabidopsis thaliana	NNHNNHNHHDYCGCCGCCRYN	NRYGGCGGCGRHDDNDNNDNN	Dap-seq OMalley et al.(2016) ERF10_col_a	0.699	0.760
ERF10 M06563_2.00	Arabidopsis thaliana	HDSCGCCGCCRHHDNNNNNN	NNNNNNHDDYGGCGGCGSHD	Dap-seq OMalley et al.(2016) ERF10_colamp_a	0.699	0.760
RAP2-6 M00717_2.00	Arabidopsis thaliana	NBGCYGNH	DNCRGCVN	PBM Chang et al.(2013) pTH7225	0.695	0.860
RAP2-6 M00841_2.00	Arabidopsis thaliana	NGCCGHHNNN	NNNDDCGGCN	PBM Franco-Zorrilla et al.(2014) RAP2.6	0.695	0.860
RAP2-6 M06579_2.00	Arabidopsis thaliana	HHDYCKCCGCCGYMD	HKRCGGCGGMGRHDD	Dap-seq OMalley et al.(2016) RAP26_col_a	0.695	0.860
RAP2-6 M06580_2.00	Arabidopsis thaliana	CGCCGY	RCGGCG	Dap-seq OMalley et al.(2016) RAP26_colamp_a	0.695	0.860
ERF1A M00848_2.00	Arabidopsis thaliana	NNNNRNN	NNYNNNN	PBM Franco-Zorrilla et al.(2014) ATERF1	0.694	0.760
ERF1A M00720_2.00	Arabidopsis thaliana	NMGCCRNCN	NGNYGGCKN	PBM Chang et al.(2013) pTH7202	0.694	0.760
ERF2 M01631_2.00	Arabidopsis thaliana	NNNGCCGNCN	NGNCGGCNNN	PBM Weirauch et al.(2014) pTH8113	0.694	0.760
ERF2 M06672_2.00	Arabidopsis thaliana	HHNHHNYHDYCGCCGCCRYND	HNRYGGCGGCGRHDRNDDNDD	Dap-seq OMalley et al.(2016) ERF2_col_a	0.694	0.760
ERF2 M06673_2.00	Arabidopsis thaliana	NNNNNNNHNNHDSMGCCGCCR	YGGCGGCKSHDNNDNNNNNNN	Dap-seq OMalley et al.(2016) ERF2_colamp_a	0.694	0.760
AT2G33710 M01613_2.00	Arabidopsis thaliana	NSMGCCGHMN	NKDCGGCKSN	PBM Weirauch et al.(2014) pTH7543	0.691	0.780
AT2G33710 M06606_2.00	Arabidopsis thaliana	DBCGCCGCCGYHDHHDNH	DNHDDHDRCGGCGGCGVH	Dap-seq OMalley et al.(2016) At2g33710_colamp_a	0.691	0.780
AT2G33710 M06607_2.00	Arabidopsis thaliana	NHDYCKCCGCCGYMD	HKRCGGCGGMGRHDN	Dap-seq OMalley et al.(2016) At2g33710_col	0.691	0.780
ERF095 M06624_2.00	Arabidopsis thaliana	YCDCCGCCGCCRYHD	HDRYGGCGGCGGHGR	Dap-seq OMalley et al.(2016) ESE1_col_a	0.691	0.740
ERF095 M06625_2.00	Arabidopsis thaliana	YHNYYDYHDCCGCCGCCDYH	DRHGGCGGCGGHDRHRRNDR	Dap-seq OMalley et al.(2016) ESE1_colamp_a	0.691	0.740
LOC_Os08g36920 M01634_2.00	Oryza sativa	NNNGSCGHNN	NNDCGSCNNN	PBM Weirauch et al.(2014) pTH8596	0.690	0.740
For this family, TFs with SR scores > 0.677* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
Pavir.J15316.1.p	AP2	80	131	APYRGVRRRPWGKWAAEIRDPQKAARVWLGTFATAEDAARAYDAAALRFRGS

Links
Other AP2 family TFs
Other *Panicum virgatum* TFs

832 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action
nAv.1.0.1.g05112	Acanthocheilonema viteae	nAv.1.0.1.g05112	N
ENSAPLG00000004964	Anas platyrhynchos	ENSAPLG00000004964	I
ANCDUO_02619	Ancylostoma duodenale	ANCDUO_02619	N
ASIM_0000512001	Anisakis simplex	ASIM_0000512001	N
ASU_06962	Ascaris suum	ASU_06962	N
Bm7459	Brugia malayi	Bm7459	N
BTMF_0000953701	Brugia timori	BTMF_0000953701	N
BXY_1512700	Bursaphelenchus xylophilus	BXY_1512700	N
CBG06922	Caenorhabditis briggsae	CBG06922	N
sma-2	Caenorhabditis elegans	WBGene00004856	N
CRE15772	Caenorhabditis remanei	CRE15772	N
DME_0000390001	Dracunculus medinensis	DME_0000390001	N
EEL_0000068901	Elaeophora elaphi	EEL_0000068901	N
EVEC_0000636701	Enterobius vermicularis	EVEC_0000636701	N
HCOI01543700	Haemonchus contortus	HCOI01543700	N
HCOI00251100	Haemonchus contortus	HCOI00251100	N
nLs.2.1.2.g02003	Litomosoides sigmodontis	nLs.2.1.2.g02003	N
ENSMGAG00000001351	Meleagris gallopavo	ENSMGAG00000001351	I
maker-nMf.1.1.scaf00076-augustus-gene-0.21	Meloidogyne floridensis	maker-nMf.1.1.scaf00076-augustus-gene-0.21	N
Minc06478	Meloidogyne incognita	Minc06478	N
NBR_0000522801	Nippostrongylus brasiliensis	NBR_0000522801	I
NBR_0000271401	Nippostrongylus brasiliensis	NBR_0000271401	N
OFLC_0000052301	Onchocerca flexuosa	OFLC_0000052301	N
nOo.2.0.1.g00974	Onchocerca ochengi	nOo.2.0.1.g00974	N
WBGene00245189	Onchocerca volvulus	WBGene00245189	N
PTRK_0000297300	Parastrongyloides trichosuri	PTRK_0000297300	N
RSKR_0000082500	Rhabditophanes kr3021	RSKR_0000082500	N
L596_g26009	Steinernema carpocapsae	L596_g26009	N
L893_g15060	Steinernema glaseri	L893_g15060	N
L898_g14583	Steinernema monticolum	L898_g14583	N
L892_g4529	Steinernema scapterisci	L892_g4529	N
SPAL_0001290200	Strongyloides papillosus	SPAL_0001290200	N
SSTP_0000571600	Strongyloides stercoralis	SSTP_0000571600	N
SVE_0161800	Strongyloides venezuelensis	SVE_0161800	N
SMUV_0000477801	Syphacia muris	SMUV_0000477801	N
TCLT_0000791701	Thelazia callipaeda	TCLT_0000791701	N
WUBG_02400	Wuchereria bancrofti	WUBG_02400	N

Pavir.J15316 (Panicum virgatum) AP2

TF Information

Directly determined binding motifs

Motifs from related TFs

DNA Binding Domains

Links

832 Related TFs

Pavir.J15316 **(Panicum virgatum)
AP2**