Q8S2T3_BRANA (Brassica napus)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 Q8S2T3_BRANA T010128_2.00 Misc (2018-Jan-19)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Q8S2T3_BRANA
M09745_2.00		 Brassica napus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$CBF16_01		 (Direct) (Direct)

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Q6T3U0_BRANA
M09743_2.00 		Brassica napus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DREBII1_01 		0.811 1.000
Q8W242_BRANA
M09747_2.00 		Brassica napus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$CBF_01 		0.707 0.900
Q8S2T2_BRANA
M09744_2.00 		Brassica napus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$CBF17_01 		0.707 0.900
A6N8P3_BRANA
M09738_2.00 		Brassica napus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DREBI5_01 		0.707 0.900
Q8S2T5_BRANA
M09746_2.00 		Brassica napus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$CBF5_01 		0.705 0.940
DREB1C
M01623_2.00 		Arabidopsis thaliana
RCCGACAT
ATGTCGGY		 PBM
Weirauch et al.(2014)
pTH8187 		0.703 0.860
DREB1C
M06639_2.00 		Arabidopsis thaliana
NNNHBRCCGACATNN
NNATGTCGGYVDNNN		 Dap-seq
OMalley et al.(2016)
CBF2_col_a 		0.703 0.860
DREB1C
M06640_2.00 		Arabidopsis thaliana
NYBRCCGACATVN
NBATGTCGGYVRN		 Dap-seq
OMalley et al.(2016)
CBF2_colamp_a 		0.703 0.860
DREB1D
M06678_2.00 		Arabidopsis thaliana
NHBRCCGACRTNN
NNAYGTCGGYVDN		 Dap-seq
OMalley et al.(2016)
CBF4_col_a 		0.699 0.880
DREB1D
M06679_2.00 		Arabidopsis thaliana
HYRCCGACATND
HNATGTCGGYRD		 Dap-seq
OMalley et al.(2016)
CBF4_colamp_a 		0.699 0.880
DREB1A
M01624_2.00 		Arabidopsis thaliana
NRCCGACNNN
NNNGTCGGYN		 PBM
Weirauch et al.(2014)
pTH8163 		0.696 0.860
DREB1A
M01625_2.00 		Arabidopsis thaliana
NNRCCGACNW
WNGTCGGYNN		 PBM
Weirauch et al.(2014)
pTH9718 		0.696 0.860
DREB1A
M06641_2.00 		Arabidopsis thaliana
HNYBRCCGACDWNN
NNWHGTCGGYVRND		 Dap-seq
OMalley et al.(2016)
CBF3_col_a 		0.696 0.860
DREB1A
M06642_2.00 		Arabidopsis thaliana
YBRCCGACATN
NATGTCGGYVR		 Dap-seq
OMalley et al.(2016)
CBF3_colamp_a 		0.696 0.860
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Q8S2T3_BRANA AP2 49 100

Links

Other AP2 family TFs
Other Brassica napus TFs

69 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
CADAFLAG00003696 Aspergillus flavus CADAFLAG00003696 N 0.000
CADAORAG00006116 Aspergillus oryzae CADAORAG00006116 N 0.000
M437DRAFT_36351 Aureobasidium melanogenum M437DRAFT_36351 N 0.000
M438DRAFT_359672 Aureobasidium pullulans M438DRAFT_359672 N 0.000
BDDG_02685 Blastomyces dermatitidis BDDG_02685 N 0.000
CIMG_05894 Coccidioides immitis CIMG_05894 N 0.000
CPC735_025030 Coccidioides posadasii CPC735_025030 N 0.000
EPUS_05891 Endocarpon pusillum EPUS_05891 N 0.000
A1O9_05997 Exophiala aquamarina A1O9_05997 N 0.000
PV05_11590 Exophiala xenobiotica PV05_11590 N 0.000
FGRRES_01428 Fusarium graminearum FGRRES_01428 N 0.000
FPSE_08525 Fusarium pseudograminearum FPSE_08525 N 0.000
HCBG_05581 Histoplasma capsulatum HCBG_05581 N 0.000
MPH_04521 Macrophomina phaseolina MPH_04521 N 0.000
e_gw1.4.1489.1 Mycosphaerella graminicola e_gw1.4.1489.1 N 0.000
UCRNP2_8766 Neofusicoccum parvum UCRNP2_8766 N 0.000
PAAG_00562 Paracoccidioides sp lutzii PAAG_00562 N 0.000
PMAA_067510 Penicillium marneffei PMAA_067510 N 0.000
PFICI_11418 Pestalotiopsis fici PFICI_11418 N 0.000
V499_01463 Pseudogymnoascus pannorum V499_01463 N 0.000
Z518_04390 Rhinocladiella mackenziei Z518_04390 N 0.000
PMAA_067510 Talaromyces marneffei PMAA_067510 N 0.000
UREG_04452 Uncinocarpus reesii UREG_04452 N 0.000
Mycgr3G41050 Zymoseptoria tritici Mycgr3G41050 N 0.000