CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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GNLVRS01_PISO0E14370g
(
Millerozyma farinosa
)
APSES
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF04383 (KilA-N)
IPR018004
GNLVRS01_PISO0E14370g
T011957_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
SOK2
M00007_2.00
Saccharomyces cerevisiae
NCMTGCAKGNN
NNCMTGCAKGN
PBM
Badis et al.(2008)
SOK2_4560
0.707
0.805
SOK2
M07438_2.00
Saccharomyces cerevisiae
NNBMTGCAKNN
NNMTGCAKVNN
PBM, CSA and or DIP-chip
Mathelier et al.(2014)
MA0385.1
0.707
0.805
SOK2
M08477_2.00
Saccharomyces cerevisiae
HNBCTGCR
YGCAGVND
Misc
DeBoer et al.(2011)
YMR016C_404
0.707
0.805
PHD1
M00006_2.00
Saccharomyces cerevisiae
GMTGCAKG
CMTGCAKC
PBM
Badis et al.(2008)
PHD1_4559
0.687
0.793
PHD1
M01516_2.00
Saccharomyces cerevisiae
NBMTGCANN
NNTGCAKVN
PBM
Zhu et al.(2009)
Phd1
0.687
0.793
PHD1
M07437_2.00
Saccharomyces cerevisiae
NSMTGCABNN
NNVTGCAKSN
PBM, CSA and or DIP-chip
Mathelier et al.(2014)
MA0355.1
0.687
0.793
PHD1
M07547_2.00
Saccharomyces cerevisiae
VCACACCCACACMCCACACMCNNMCVCH
DGBGKNNGKGTGTGGKGTGTGGGTGTGB
ChIP-exo
Rhee et al.(2011)
Phd1_1
0.687
0.793
PHD1
M07548_2.00
Saccharomyces cerevisiae
MYGCRC
GYGCRK
ChIP-exo
Rhee et al.(2011)
Phd1_2
0.687
0.793
PHD1
M07549_2.00
Saccharomyces cerevisiae
TAGCCGCCGAR
YTCGGCGGCTA
ChIP-exo
Rhee et al.(2011)
Phd1_3
0.687
0.793
PHD1
M08475_2.00
Saccharomyces cerevisiae
SCNGCRGG
CCYGCNGS
Misc
DeBoer et al.(2011)
YKL043W_393
0.687
0.793
PHD1
M08476_2.00
Saccharomyces cerevisiae
NSMTGCABNN
NNVTGCAKSN
Misc
DeBoer et al.(2011)
YKL043W_554
0.687
0.793
HCAG_07413
M01651_2.00
Histoplasma capsulatum
NNNHRYDNNN
NNNHRYDNNN
PBM
Weirauch et al.(2014)
pTH9346
0.669
0.759
e_gw1.5.76.1
M01652_2.00
Nectria haematococca
NNVTGCABNN
NNVTGCABNN
PBM
Weirauch et al.(2014)
pTH9267
0.655
0.724
For this family, TFs with SR scores >
0.650
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
CCE79776
APSES
312
403
QVDANNVSVVRRADNNMINGTKLLNVAQMTRGRRDGILKSEKVRHVVKIGSMHLKGVWIPFERALAMAQREGIVDLLYPLFVRDIKRVIQTG
Links
Other
APSES
family TFs
Other
Millerozyma farinosa
TFs
125 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
ATEG_01777
Aspergillus terreus
CADATEAG00002011
I
0.000
M437DRAFT_46977
Aureobasidium melanogenum
M437DRAFT_46977
N
0.000
M438DRAFT_274091
Aureobasidium pullulans
M438DRAFT_274091
N
0.000
AUEXF2481DRAFT_546489
Aureobasidium subglaciale
AUEXF2481DRAFT_546489
N
0.000
BGHDH14_bgh02635
Blumeria graminis
BGHDH14_bgh02635
I
0.000
VHEMI06531
Torrubiella hemipterigena
VHEMI06531
N
0.000