PHD1 (Saccharomyces cerevisiae)
APSES

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF04383 (KilA-N) IPR018004 YKL043W T012465_2.00 Ensembl (2018-Dec-8) Link out
NCBI Gene Info:
Enables DNA-binding transcription factor activity. Involved in positive regulation of pseudohyphal growth and positive regulation of transcription by RNA polymerase II. Located in nucleus. [provided by Alliance of Genome Resources, Apr 2022]

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PHD1
M00006_2.00		 Saccharomyces cerevisiae
GMTGCAKG
CMTGCAKC		 PBM
Badis et al.(2008)
PHD1_4559		 (Direct) (Direct)
PHD1
M01516_2.00		 Saccharomyces cerevisiae
NBMTGCANN
NNTGCAKVN		 PBM
Zhu et al.(2009)
Phd1		 (Direct) (Direct)
PHD1
M07437_2.00		 Saccharomyces cerevisiae
NSMTGCABNN
NNVTGCAKSN		 PBM, CSA and or DIP-chip
Mathelier et al.(2014)
MA0355.1		 (Direct) (Direct)
PHD1
M07547_2.00		 Saccharomyces cerevisiae
VCACACCCACACMCCACACMCNNMCVCH
DGBGKNNGKGTGTGGKGTGTGGGTGTGB		 ChIP-exo
Rhee et al.(2011)
Phd1_1		 (Direct) (Direct)
PHD1
M07548_2.00		 Saccharomyces cerevisiae
MYGCRC
GYGCRK		 ChIP-exo
Rhee et al.(2011)
Phd1_2		 (Direct) (Direct)
PHD1
M07549_2.00		 Saccharomyces cerevisiae
TAGCCGCCGAR
YTCGGCGGCTA		 ChIP-exo
Rhee et al.(2011)
Phd1_3		 (Direct) (Direct)
PHD1
M08475_2.00		 Saccharomyces cerevisiae
SCNGCRGG
CCYGCNGS		 Misc
DeBoer et al.(2011)
YKL043W_393		 (Direct) (Direct)
PHD1
M08476_2.00		 Saccharomyces cerevisiae
NSMTGCABNN
NNVTGCAKSN		 Misc
DeBoer et al.(2011)
YKL043W_554		 (Direct) (Direct)

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
For this family, TFs with SR scores > 0.650 will likely have a similar motif

Experimental Constructs

Motif ID Domain From To Sequence
M00006_2.00 APSES 43 132
M01516_2.00 APSES 201 290

DNA Binding Domains

Protein ID Domain From To Sequence
YKL043W APSES 201 290

Links

Other APSES family TFs
Other Saccharomyces cerevisiae TFs

44 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
13647_YKL043W Saccharomyces paradoxus 13647_YKL043W I 0.850
13508_YKL043W Saccharomyces mikatae 13508_YKL043W I 0.842
SU7_2011 Saccharomyces arboricola SU7_2011 I 0.834
SKUD_205603 Saccharomyces kudriavzevii SKUD_205603 I 0.773
Scas_Contig625.8 Saccharomyces castellii Scas_Contig625.8 I 0.755
NCAS_0A04710 Naumovozyma castellii NCAS_0A04710 I 0.755
14607_YKL043W Saccharomyces bayanus 14607_YKL043W I 0.747
KAFR_0B01410 Kazachstania africana KAFR_0B01410 I 0.732
JL09_g3139 Pichia kudriavzevii JL09_g3139 I 0.728
KUCA_T00004103001 Kuraishia capsulata KUCA_T00004103001 I 0.698
PAS_chr1-4_0530 Komagataella pastoris PAS_chr1-4_0530 I 0.691
HPODL_04965 Ogataea parapolymorpha HPODL_04965 I 0.691
XP_002490663.1 Pichia pastoris XP_002490663.1 I 0.691
KAFR_0A02120 Kazachstania africana KAFR_0A02120 I 0.690
PGUG_03651 Candida guilliermondii PGUG_03651 I 0.687
CPAG_00178 Candida parapsilosis CPAG_00178 I 0.687
estExt_fgenesh1_pg.C_chr_3.10654 Pichia stipitis estExt_fgenesh1_pg.C_chr_3.10654 I 0.687
PICST_67427 Scheffersomyces stipitis PICST_67427 I 0.687
PGUG_03651 Meyerozyma guilliermondii PGUG_03651 I 0.687
CaO19.610 Candida albicans CaO19.610 I 0.687
SPAPADRAFT_59209 Spathaspora passalidarum SPAPADRAFT_59209 I 0.687
DEHA2E10978g Debaryomyces hansenii DEHA2E10978g I 0.687
CORT_0G01760 Candida orthopsilosis CORT_0G01760 I 0.687
CD36_33560 Candida dubliniensis CD36_33560 I 0.687
G210_4810 Candida maltosa G210_4810 I 0.687
GNLVRS01_PISO0E14370g Millerozyma farinosa GNLVRS01_PISO0E14370g I 0.687
CaO19.8243 Candida albicans CaO19.8243 I 0.687
GNLVRS01_PISO0F15757g Millerozyma farinosa GNLVRS01_PISO0F15757g I 0.687
KLTH0D07876g Kluyveromyces thermotolerans KLTH0D07876g I 0.682
KLTH0D07876g Lachancea thermotolerans KLTH0D07876g I 0.682
CAGL0L01771g Candida glabrata CAGL0L01771g I 0.682
LELG_05390 Lodderomyces elongisporus LELG_05390 I 0.674
CLUG_02047 Candida lusitaniae CLUG_02047 I 0.669
CLUG_02047 Clavispora lusitaniae CLUG_02047 I 0.669
BN7_6724 Wickerhamomyces ciferrii BN7_6724 I 0.669
17689_YMR016C Saccharomyces bayanus 17689_YMR016C I 0.663
AACERI_AaceriABR055C Saccharomycetaceae sp ashbya aceri AACERI_AaceriABR055C I 0.663
AGOS_ABR055C Ashbya gossypii AGOS_ABR055C I 0.663
SKUD_205409 Saccharomyces kudriavzevii SKUD_205409 I 0.663
KLLA0_F04840g Kluyveromyces lactis KLLA0_F04840g I 0.660
HPODL_01835 Ogataea parapolymorpha HPODL_01835 I 0.658
16462_YMR016C Saccharomyces mikatae 16462_YMR016C I 0.658
NDAI_0K01760 Naumovozyma dairenensis NDAI_0K01760 I 0.658
BN7_6356 Wickerhamomyces ciferrii BN7_6356 I 0.656