13647_YKL043W (Saccharomyces paradoxus)
APSES

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF04383 (KilA-N) IPR018004 13647_YKL043W T013952_2.00 Superfamily (2010-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PHD1
M00006_2.00 		Saccharomyces cerevisiae
GMTGCAKG
CMTGCAKC		 PBM
Badis et al.(2008)
PHD1_4559 		0.850 0.988
PHD1
M01516_2.00 		Saccharomyces cerevisiae
NBMTGCANN
NNTGCAKVN		 PBM
Zhu et al.(2009)
Phd1 		0.850 0.988
PHD1
M07437_2.00 		Saccharomyces cerevisiae
NSMTGCABNN
NNVTGCAKSN		 PBM, CSA and or DIP-chip
Mathelier et al.(2014)
MA0355.1 		0.850 0.988
PHD1
M07547_2.00 		Saccharomyces cerevisiae
VCACACCCACACMCCACACMCNNMCVCH
DGBGKNNGKGTGTGGKGTGTGGGTGTGB		 ChIP-exo
Rhee et al.(2011)
Phd1_1 		0.850 0.988
PHD1
M07548_2.00 		Saccharomyces cerevisiae
MYGCRC
GYGCRK		 ChIP-exo
Rhee et al.(2011)
Phd1_2 		0.850 0.988
PHD1
M07549_2.00 		Saccharomyces cerevisiae
TAGCCGCCGAR
YTCGGCGGCTA		 ChIP-exo
Rhee et al.(2011)
Phd1_3 		0.850 0.988
PHD1
M08475_2.00 		Saccharomyces cerevisiae
SCNGCRGG
CCYGCNGS		 Misc
DeBoer et al.(2011)
YKL043W_393 		0.850 0.988
PHD1
M08476_2.00 		Saccharomyces cerevisiae
NSMTGCABNN
NNVTGCAKSN		 Misc
DeBoer et al.(2011)
YKL043W_554 		0.850 0.988
For this family, TFs with SR scores > 0.650 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
13647_YKL043W APSES 201 289

Links

Other APSES family TFs
Other Saccharomyces paradoxus TFs

45 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
13508_YKL043W Saccharomyces mikatae 13508_YKL043W I 0.873
PHD1 Saccharomyces cerevisiae YKL043W D 0.850
SU7_2011 Saccharomyces arboricola SU7_2011 I 0.840
SKUD_205603 Saccharomyces kudriavzevii SKUD_205603 I 0.766
14607_YKL043W Saccharomyces bayanus 14607_YKL043W I 0.765
NCAS_0A04710 Naumovozyma castellii NCAS_0A04710 I 0.736
Scas_Contig625.8 Saccharomyces castellii Scas_Contig625.8 I 0.736
JL09_g3139 Pichia kudriavzevii JL09_g3139 I 0.728
KUCA_T00004103001 Kuraishia capsulata KUCA_T00004103001 I 0.716
KAFR_0B01410 Kazachstania africana KAFR_0B01410 I 0.714
PAS_chr1-4_0530 Komagataella pastoris PAS_chr1-4_0530 I 0.710
XP_002490663.1 Pichia pastoris XP_002490663.1 I 0.710
KAFR_0A02120 Kazachstania africana KAFR_0A02120 I 0.708
KLTH0D07876g Lachancea thermotolerans KLTH0D07876g I 0.701
KLTH0D07876g Kluyveromyces thermotolerans KLTH0D07876g I 0.701
HPODL_04965 Ogataea parapolymorpha HPODL_04965 I 0.691
CLUG_02047 Candida lusitaniae CLUG_02047 I 0.687
BN7_6724 Wickerhamomyces ciferrii BN7_6724 I 0.687
CLUG_02047 Clavispora lusitaniae CLUG_02047 I 0.687
CAGL0L01771g Candida glabrata CAGL0L01771g I 0.682
SKUD_205409 Saccharomyces kudriavzevii SKUD_205409 I 0.682
17689_YMR016C Saccharomyces bayanus 17689_YMR016C I 0.682
KLLA0_F04840g Kluyveromyces lactis KLLA0_F04840g I 0.678
NDAI_0K01760 Naumovozyma dairenensis NDAI_0K01760 I 0.676
16462_YMR016C Saccharomyces mikatae 16462_YMR016C I 0.676
CPAG_00178 Candida parapsilosis CPAG_00178 I 0.669
PGUG_03651 Candida guilliermondii PGUG_03651 I 0.669
CaO19.610 Candida albicans CaO19.610 I 0.669
CaO19.8243 Candida albicans CaO19.8243 I 0.669
CD36_33560 Candida dubliniensis CD36_33560 I 0.669
CORT_0G01760 Candida orthopsilosis CORT_0G01760 I 0.669
DEHA2E10978g Debaryomyces hansenii DEHA2E10978g I 0.669
G210_4810 Candida maltosa G210_4810 I 0.669
GNLVRS01_PISO0E14370g Millerozyma farinosa GNLVRS01_PISO0E14370g I 0.669
GNLVRS01_PISO0F15757g Millerozyma farinosa GNLVRS01_PISO0F15757g I 0.669
PGUG_03651 Meyerozyma guilliermondii PGUG_03651 I 0.669
PICST_67427 Scheffersomyces stipitis PICST_67427 I 0.669
SPAPADRAFT_59209 Spathaspora passalidarum SPAPADRAFT_59209 I 0.669
estExt_fgenesh1_pg.C_chr_3.10654 Pichia stipitis estExt_fgenesh1_pg.C_chr_3.10654 I 0.669
SAKL0D13442g Lachancea kluyveri SAKL0D13442g I 0.667
LALA0_S02e00628g Lachancea lanzarotensis LALA0_S02e00628g I 0.659
Kwal_8176 Kluyveromyces waltii Kwal_8176 I 0.659
HPODL_01835 Ogataea parapolymorpha HPODL_01835 I 0.658
LELG_05390 Lodderomyces elongisporus LELG_05390 I 0.656
SU7_2504 Saccharomyces arboricola SU7_2504 I 0.653