CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

Scas_Contig625.8 *(Saccharomyces castellii)* APSES
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source
PF04383 (KilA-N)	IPR018004	Scas_Contig625.8	T013948_2.00	Misc (2018-Jan-19)
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
PHD1 M00006_2.00	Saccharomyces cerevisiae	GMTGCAKG	CMTGCAKC	PBM Badis et al.(2008) PHD1_4559	0.755	0.747
PHD1 M01516_2.00	Saccharomyces cerevisiae	NBMTGCANN	NNTGCAKVN	PBM Zhu et al.(2009) Phd1	0.755	0.747
PHD1 M07437_2.00	Saccharomyces cerevisiae	NSMTGCABNN	NNVTGCAKSN	PBM, CSA and or DIP-chip Mathelier et al.(2014) MA0355.1	0.755	0.747
PHD1 M07547_2.00	Saccharomyces cerevisiae	VCACACCCACACMCCACACMCNNMCVCH	DGBGKNNGKGTGTGGKGTGTGGGTGTGB	ChIP-exo Rhee et al.(2011) Phd1_1	0.755	0.747
PHD1 M07548_2.00	Saccharomyces cerevisiae	MYGCRC	GYGCRK	ChIP-exo Rhee et al.(2011) Phd1_2	0.755	0.747
PHD1 M07549_2.00	Saccharomyces cerevisiae	TAGCCGCCGAR	YTCGGCGGCTA	ChIP-exo Rhee et al.(2011) Phd1_3	0.755	0.747
PHD1 M08475_2.00	Saccharomyces cerevisiae	SCNGCRGG	CCYGCNGS	Misc DeBoer et al.(2011) YKL043W_393	0.755	0.747
PHD1 M08476_2.00	Saccharomyces cerevisiae	NSMTGCABNN	NNVTGCAKSN	Misc DeBoer et al.(2011) YKL043W_554	0.755	0.747
For this family, TFs with SR scores > 0.650* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
Scas_Contig625.8	APSES	224	314	QVECNGVAVVRRADNDMINGTKLLNVTKMTRGRRDGILRAEKVRSVIKIGSMHLKGVWIPFDRALMMAKREKIVDLLYPLFVKDINSILSQ

Links
Other APSES family TFs
Other *Saccharomyces castellii* TFs