arid5b (Danio rerio)
ARID/BRIGHT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF01388 (ARID) IPR001606 ENSDARG00000037196 T014496_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Arid5b
M01661_2.00 		Mus musculus
NDATWHNN
NNDWATHN		 PBM
Weirauch et al.(2014)
pTH4426 		0.760 0.965
ARID5B
M08707_2.00 		Homo sapiens
DNBKDRTATTSKD
HMSAATAYHMVNH		 Misc
Kulakovskiy et al.(2013)
ARI5B_HUMAN.H11MO.0.C 		0.760 0.965
Arid5b
M08708_2.00 		Mus musculus
DNBKDRTATTSKD
HMSAATAYHMVNH		 Misc
Kulakovskiy et al.(2013)
ARI5B_MOUSE.H11MO.0.C 		0.760 0.965
ARID5B
M09767_2.00 		Homo sapiens
KBDGTATTGTRSWB
VWSYACAATACHVM		 Transfac
Matys et al.(2006)
V$MRF2_01 		0.760 0.965
Arid5a
M00116_2.00 		Mus musculus
NHAATATTDNN
NNHAATATTDN		 PBM
Badis et al.(2009)
Arid5a_3770 		0.657 0.767
Arid5a
M01663_2.00 		Rattus norvegicus
NNNRWATHNN
NNDATWYNNN		 PBM
Weirauch et al.(2014)
pTH5121 		0.657 0.767
arid6
M01657_2.00 		Danio rerio
NNRWATYN
NRATWYNN		 PBM
Weirauch et al.(2014)
pTH5120 		0.630 0.616
e_gw.4.260.1_CONSTRUCT
M01668_2.00 		PBM CONSTRUCTS
NNNDATHNNN
NNNDATHNNN		 PBM
Weirauch et al.(2014)
pTH5122 		0.506 0.605
For this family, TFs with SR scores > 0.422 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSDARP00000054091 ARID/BRIGHT 214 300

Links

Other ARID/BRIGHT family TFs
Other Danio rerio TFs

150 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
CADANGAG00011564 Aspergillus niger CADANGAG00011564 I 0.000
COCC4DRAFT_135536 Bipolaris maydis COCC4DRAFT_135536 N 0.000
COCMIDRAFT_97135 Bipolaris oryzae COCMIDRAFT_97135 N 0.000
COCSADRAFT_156072 Bipolaris sorokiniana COCSADRAFT_156072 N 0.000
COCVIDRAFT_106561 Bipolaris victoriae COCVIDRAFT_106561 N 0.000
COCCADRAFT_83759 Bipolaris zeicola COCCADRAFT_83759 N 0.000
BGHDH14_bgh01891 Blumeria graminis BGHDH14_bgh01891 I 0.000
Bcin10g01580 Botrytis cinerea Bcin10g01580 I 0.000
CaO19.1168 Candida albicans CaO19.1168 I 0.000
CaO19.1227 Candida albicans CaO19.1227 I 0.000
CaO19.8761 Candida albicans CaO19.8761 I 0.000
CaO19.8813 Candida albicans CaO19.8813 I 0.000
CD36_10810 Candida dubliniensis CD36_10810 I 0.000
CLUG_05915 Candida lusitaniae CLUG_05915 N 0.000
G210_5732 Candida maltosa G210_5732 I 0.000
CANTEDRAFT_115466 Candida tenuis CANTEDRAFT_115466 N 0.000
CTRG_03975 Candida tropicalis CTRG_03975 N 0.000
CTRG_03493 Candida tropicalis CTRG_03493 I 0.000
A1O1_01627 Capronia coronata A1O1_01627 N 0.000
A1O3_08442 Capronia epimyces A1O3_08442 N 0.000
CTHT_0045110 Chaetomium thermophilum CTHT_0045110 I 0.000
PV07_00139 Cladophialophora immunda PV07_00139 I 0.000
estExt_fgenesh1_pg.C_150042 Cochliobolus heterostrophus C5 estExt_fgenesh1_pg.C_150042 N 0.000
CFIO01_10586 Colletotrichum fioriniae CFIO01_10586 N 0.000
GLRG_03456 Colletotrichum graminicola GLRG_03456 N 0.000
CH063_12034 Colletotrichum higginsianum CH063_12034 N 0.000
CH063_11092 Colletotrichum higginsianum CH063_11092 N 0.000
CSUB01_04728 Colletotrichum sublineola CSUB01_04728 N 0.000
CC1G_01982 Coprinopsis cinerea CC1G_01982 N 0.000
HMPREF1120_00016 Exophiala dermatitidis HMPREF1120_00016 N 0.000
PV06_11710 Exophiala oligosperma PV06_11710 N 0.000
PV11_01869 Exophiala sideris PV11_01869 N 0.000
Z517_01830 Fonsecaea pedrosoi Z517_01830 I 0.000
NechaG37042 Fusarium solani NechaG37042 N 0.000
SAKL0D02596g Lachancea kluyveri SAKL0D02596g N 0.000
MGG_08093 Magnaporthe oryzae MGG_08093 I 0.000
MAC_03890 Metarhizium acridum MAC_03890 I 0.000
MAM_05054 Metarhizium album MAM_05054 I 0.000
MANI_012280 Metarhizium anisopliae MANI_012280 I 0.000
MBR_04325 Metarhizium brunneum MBR_04325 I 0.000
MGU_05613 Metarhizium guizhouense MGU_05613 I 0.000
MAJ_05190 Metarhizium majus MAJ_05190 I 0.000
X797_010800 Metarhizium robertsii X797_010800 I 0.000
e_gw1.31.153.1 Nectria haematococca e_gw1.31.153.1 N 0.000
PMAA_046250 Penicillium marneffei PMAA_046250 I 0.000
PFICI_06028 Pestalotiopsis fici PFICI_06028 I 0.000
estExt_fgenesh1_pg.C_chr_1.20230 Pichia stipitis estExt_fgenesh1_pg.C_chr_1.20230 N 0.000
PODANS_4_2530 Podospora anserina PODANS_4_2530 I 0.000
PICST_66647 Scheffersomyces stipitis PICST_66647 N 0.000
SBOR_6332 Sclerotinia borealis SBOR_6332 I 0.000
SPAPADRAFT_61489 Spathaspora passalidarum SPAPADRAFT_61489 I 0.000
S40285_01325 Stachybotrys chlorohalonata S40285_01325 I 0.000
PMAA_046250 Talaromyces marneffei PMAA_046250 I 0.000
TSTA_035500 Talaromyces stipitatus TSTA_035500 I 0.000
VHEMI00428 Torrubiella hemipterigena VHEMI00428 I 0.000
TRIATDRAFT_243083 Trichoderma atroviride TRIATDRAFT_243083 I 0.000
TRIVIDRAFT_114462 Trichoderma virens TRIVIDRAFT_114462 I 0.000
UV8b_8229 Ustilaginoidea virens UV8b_8229 I 0.000
VDBG_04249 Verticillium albo atrum VDBG_04249 I 0.000
VDBG_04249 Verticillium alfalfae VDBG_04249 I 0.000
VDAG_09170 Verticillium dahliae VDAG_09170 N 0.000
VDAG_01478 Verticillium dahliae VDAG_01478 I 0.000