TCM_034809 (Theobroma cacao)
ARID/BRIGHT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF01388 (ARID) IPR001606 TCM_034809 T015686_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ARID3
M06695_2.00 		Arabidopsis thaliana
AAWWHNAAATYAAWW
WWTTRATTTNDWWTT		 Dap-seq
OMalley et al.(2016)
AT2G17410_col_a 		0.681 0.812
ARID6
M06694_2.00 		Arabidopsis thaliana
HAATTRAWTTN
NAAWTYAATTD		 Dap-seq
OMalley et al.(2016)
AT1G20910_col_a 		0.672 0.788
For this family, TFs with SR scores > 0.422 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
EOY15870 ARID/BRIGHT 146 231
EOY15871 ARID/BRIGHT 146 231
EOY15872 ARID/BRIGHT 146 231
EOY15873 ARID/BRIGHT 146 231
EOY15874 ARID/BRIGHT 146 231
EOY15875 ARID/BRIGHT 146 231
EOY15876 ARID/BRIGHT 146 231
EOY15877 ARID/BRIGHT 146 231
EOY15878 ARID/BRIGHT 146 231

Links

Other ARID/BRIGHT family TFs
Other Theobroma cacao TFs

154 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ZNF317 Callithrix jacchus ENSCJAG00000006214 I
ENSCPOG00000003954 Cavia porcellus ENSCPOG00000003954 I
ENSCSAG00000007764 Chlorocebus sabaeus ENSCSAG00000007764 I
ZNF317 Dasypus novemcinctus ENSDNOG00000044751 I
Zfp317 Dipodomys ordii ENSDORG00000011612 I
ZNF317 Homo sapiens ENSG00000130803 D
ENSSTOG00000021569 Ictidomys tridecemlineatus ENSSTOG00000021569 I
ENSP00000247956 Macaca fascicularis ENSP00000247956 I
ZNF317 Macaca mulatta ENSMMUG00000020841 I
Zfp317 Mus musculus ENSMUSG00000057551 I
Myotis_brandtii_ZNF317_10002973 Myotis brandtii Myotis_brandtii_ZNF317_10002973 I
ZNF317 Myotis lucifugus ENSMLUG00000012039 I
ENSNLEG00000011962 Nomascus leucogenys ENSNLEG00000011962 I
ZNF317 Ochotona princeps ENSOPRG00000014061 I
ENSOCUG00000007715 Oryctolagus cuniculus ENSOCUG00000007715 I
ZNF317 Otolemur garnettii ENSOGAG00000011129 I
ENSPANG00000007764 Papio anubis ENSPANG00000007764 I
ENSPPYG00000009520 Pongo abelii ENSPPYG00000009520 I
ENSSSCG00000022610 Sus scrofa ENSSSCG00000022610 I