CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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TCM_034809
(
Theobroma cacao
)
ARID/BRIGHT
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF01388 (ARID)
IPR001606
TCM_034809
T015686_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
ARID3
M06695_2.00
Arabidopsis thaliana
AAWWHNAAATYAAWW
WWTTRATTTNDWWTT
Dap-seq
OMalley et al.(2016)
AT2G17410_col_a
0.681
0.812
ARID6
M06694_2.00
Arabidopsis thaliana
HAATTRAWTTN
NAAWTYAATTD
Dap-seq
OMalley et al.(2016)
AT1G20910_col_a
0.672
0.788
For this family, TFs with SR scores >
0.422
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
EOY15870
ARID/BRIGHT
146
231
ERAAFMKELESFYKDRSLEFKPPKFYGEPLNCLKLWRAVIRLGGYEVVTASKLWRQVGESFHPPKTCTTVSWTFRIFYEKALLEYE
EOY15871
ARID/BRIGHT
146
231
ERAAFMKELESFYKDRSLEFKPPKFYGEPLNCLKLWRAVIRLGGYEVVTASKLWRQVGESFHPPKTCTTVSWTFRIFYEKALLEYE
EOY15872
ARID/BRIGHT
146
231
ERAAFMKELESFYKDRSLEFKPPKFYGEPLNCLKLWRAVIRLGGYEVVTASKLWRQVGESFHPPKTCTTVSWTFRIFYEKALLEYE
EOY15873
ARID/BRIGHT
146
231
ERAAFMKELESFYKDRSLEFKPPKFYGEPLNCLKLWRAVIRLGGYEVVTASKLWRQVGESFHPPKTCTTVSWTFRIFYEKALLEYE
EOY15874
ARID/BRIGHT
146
231
ERAAFMKELESFYKDRSLEFKPPKFYGEPLNCLKLWRAVIRLGGYEVVTASKLWRQVGESFHPPKTCTTVSWTFRIFYEKALLEYE
EOY15875
ARID/BRIGHT
146
231
ERAAFMKELESFYKDRSLEFKPPKFYGEPLNCLKLWRAVIRLGGYEVVTASKLWRQVGESFHPPKTCTTVSWTFRIFYEKALLEYE
EOY15876
ARID/BRIGHT
146
231
ERAAFMKELESFYKDRSLEFKPPKFYGEPLNCLKLWRAVIRLGGYEVVTASKLWRQVGESFHPPKTCTTVSWTFRIFYEKALLEYE
EOY15877
ARID/BRIGHT
146
231
ERAAFMKELESFYKDRSLEFKPPKFYGEPLNCLKLWRAVIRLGGYEVVTASKLWRQVGESFHPPKTCTTVSWTFRIFYEKALLEYE
EOY15878
ARID/BRIGHT
146
231
ERAAFMKELESFYKDRSLEFKPPKFYGEPLNCLKLWRAVIRLGGYEVVTASKLWRQVGESFHPPKTCTTVSWTFRIFYEKALLEYE
Links
Other
ARID/BRIGHT
family TFs
Other
Theobroma cacao
TFs
154 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
POPTR_0002s00550
Populus trichocarpa
POPTR_0002s00550
I
0.785
30170.m013806
Ricinus communis
30170.m013806
I
0.785
cassava27165.m1
Manihot esculenta
cassava27165.m1
I
0.785
mgf001698m
Mimulus guttatus
mgf001698m
I
0.785
mgf002691m
Mimulus guttatus
mgf002691m
I
0.785
Ciclev10001099m.g
Citrus clementina
Ciclev10001099m.g
I
0.785
Eucgr.F01815
Eucalyptus grandis
Eucgr.F01815
I
0.785
Gorai.002G112400
Gossypium raimondii
Gorai.002G112400
I
0.785
orange1.1g012780m.g
Citrus sinensis
orange1.1g012780m.g
I
0.785
SapurV1A.0016s0160
Salix purpurea
SapurV1A.0016s0160
I
0.785
SapurV1A.0554s0250
Salix purpurea
SapurV1A.0554s0250
I
0.785
PRUPE_ppa006712mg
Prunus persica
PRUPE_ppa006712mg
I
0.771
VIT_18s0122g00560
Vitis vinifera
VIT_18s0122g00560
I
0.771
Pm022898
Prunus mume
Pm022898
I
0.771
GLYMA04G01560
Glycine max
GLYMA04G01560
I
0.762
GLYMA06G01640
Glycine max
GLYMA06G01640
I
0.762
MTR_3g116200
Medicago truncatula
MTR_3g116200
I
0.762
PGSC0003DMG400010001
Solanum tuberosum
PGSC0003DMG400010001
I
0.762
Solyc04g082820.2
Solanum lycopersicum
Solyc04g082820.2
I
0.762
Ca_04797
Cicer arietinum
Ca_04797
I
0.762
chr1.CM0150.370.nc
Lotus japonicus
chr1.CM0150.370.nc
I
0.762
mg023226m
Mimulus guttatus
mg023226m
I
0.756
mgf014392m
Mimulus guttatus
mgf014392m
I
0.756
AT1G76510
Arabidopsis thaliana
AT1G76510
I
0.748
fgenesh2_kg.2__1939__AT1G76510.1
Arabidopsis lyrata
fgenesh2_kg.2__1939__AT1G76510.1
I
0.748
Bostr.20129s0090
Boechera stricta
Bostr.20129s0090
I
0.748
Cagra.2281s0033
Capsella grandiflora
Cagra.2281s0033
I
0.748
Carubv10020299m.g
Capsella rubella
Carubv10020299m.g
I
0.748
evm.TU.supercontig_26.2
Carica papaya
evm.TU.supercontig_26.2
I
0.748
Thhalv10018578m.g
Eutrema salsugineum
Thhalv10018578m.g
I
0.748
PK02181.1
Cannabis sativa
PK02181.1
I
0.748
BGIOSGA023283
Oryza indica
BGIOSGA023283
I
0.741
GRMZM2G180654
Zea mays
GRMZM2G180654
I
0.741
GRMZM5G883993
Zea mays
GRMZM5G883993
I
0.741
OB06G29250
Oryza brachyantha
OB06G29250
I
0.741
OS06G0622300
Oryza sativa
OS06G0622300
I
0.741
POPTR_0004s21870
Populus trichocarpa
POPTR_0004s21870
I
0.741
Sb10g024400
Sorghum bicolor
Sb10g024400
I
0.741
Si006372m.g
Setaria italica
Si006372m.g
I
0.741
Lus10001618.g
Linum usitatissimum
Lus10001618.g
I
0.741
Lus10022981.g
Linum usitatissimum
Lus10022981.g
I
0.741
Pavir.Db00824
Panicum virgatum
Pavir.Db00824
I
0.741
Bo6g120610
Brassica oleracea
Bo6g120610
I
0.730
MTR_5g024920
Medicago truncatula
MTR_5g024920
I
0.728
PRUPE_ppa001071mg
Prunus persica
PRUPE_ppa001071mg
I
0.728
TCM_007605
Theobroma cacao
TCM_007605
I
0.728
Pm020703
Prunus mume
Pm020703
I
0.728
30162.m001290
Ricinus communis
30162.m001290
I
0.728
Gorai.012G137700
Gossypium raimondii
Gorai.012G137700
I
0.728
mgf005009m
Mimulus guttatus
mgf005009m
I
0.722
AMTR_s00022p00128600
Amborella trichopoda
AMTR_s00022p00128600
I
0.721
BGIOSGA005739
Oryza indica
BGIOSGA005739
I
0.721
F775_06069
Aegilops tauschii
F775_06069
I
0.721
GRMZM2G421899
Zea mays
GRMZM2G421899
I
0.721
OB02G37240
Oryza brachyantha
OB02G37240
I
0.721
OBART02G30070
Oryza barthii
OBART02G30070
I
0.721
OGLUM02G30740
Oryza glumaepatula
OGLUM02G30740
I
0.721
OMERI02G28920
Oryza meridionalis
OMERI02G28920
I
0.721
ONIVA02G32840
Oryza nivara
ONIVA02G32840
I
0.721
OPUNC02G27630
Oryza punctata
OPUNC02G27630
I
0.721
ORGLA02G0256100
Oryza glaberrima
ORGLA02G0256100
I
0.721
ORUFI02G31730
Oryza rufipogon
ORUFI02G31730
I
0.721
OS02G0714300
Oryza sativa
OS02G0714300
I
0.721
Sb04g029990
Sorghum bicolor
Sb04g029990
I
0.721
Si017073m.g
Setaria italica
Si017073m.g
I
0.721
Traes_6AL_D304A3C3B
Triticum aestivum
Traes_6AL_D304A3C3B
I
0.721
Traes_6DL_E6E385C31
Triticum aestivum
Traes_6DL_E6E385C31
I
0.721
TRIUR3_34317
Triticum urartu
TRIUR3_34317
I
0.721
Pavir.Aa00633
Panicum virgatum
Pavir.Aa00633
I
0.721
Pavir.Ab03084
Panicum virgatum
Pavir.Ab03084
I
0.721
PDK_20s1326081g004
Phoenix dactylifera
PDK_20s1326081g004
I
0.721
GLYMA01G36040
Glycine max
GLYMA01G36040
I
0.718
GLYMA09G32820
Glycine max
GLYMA09G32820
I
0.718
GLYMA11G09370
Glycine max
GLYMA11G09370
I
0.718
PRUPE_ppa003469mg
Prunus persica
PRUPE_ppa003469mg
I
0.718
VIT_04s0044g01840
Vitis vinifera
VIT_04s0044g01840
I
0.718
Ca_10698
Cicer arietinum
Ca_10698
I
0.718
Cla009111
Citrullus lanatus
Cla009111
I
0.718
Pm026967
Prunus mume
Pm026967
I
0.718
29682.m000576
Ricinus communis
29682.m000576
I
0.718
cassava23401.valid.m1
Manihot esculenta
cassava23401.valid.m1
I
0.718
cassava24840.valid.m1
Manihot esculenta
cassava24840.valid.m1
I
0.718
Cucsa.323280
Cucumis sativus
Cucsa.323280
I
0.718
Ciclev10025351m.g
Citrus clementina
Ciclev10025351m.g
I
0.718
Eucgr.I02198
Eucalyptus grandis
Eucgr.I02198
I
0.718
Gorai.003G000800
Gossypium raimondii
Gorai.003G000800
I
0.718
MDP0000188323
Malus domestica
MDP0000188323
I
0.718
MDP0000834789
Malus domestica
MDP0000834789
I
0.718
orange1.1g009744m.g
Citrus sinensis
orange1.1g009744m.g
I
0.718
PK12537.1
Cannabis sativa
PK12537.1
I
0.718
Lus10016045.g
Linum usitatissimum
Lus10016045.g
I
0.715
LPERR02G24480
Leersia perrieri
LPERR02G24480
I
0.708
Aquca_007_00955
Aquilegia coerulea
Aquca_007_00955
I
0.708
BRADI1G55550
Brachypodium distachyon
BRADI1G55550
I
0.706
Ciclev10030351m.g
Citrus clementina
Ciclev10030351m.g
I
0.705
MDP0000890776
Malus domestica
MDP0000890776
I
0.705
orange1.1g004663m.g
Citrus sinensis
orange1.1g004663m.g
I
0.705
Bo9g024490
Brassica oleracea
Bo9g024490
I
0.704
Bra037275
Brassica rapa
Bra037275
I
0.704
Traes_2AS_49D6010DA1
Triticum aestivum
Traes_2AS_49D6010DA1
I
0.704
Traes_2BS_B3411790F
Triticum aestivum
Traes_2BS_B3411790F
I
0.704
Traes_2DL_C465ACBE4
Triticum aestivum
Traes_2DL_C465ACBE4
I
0.704
gene17116-v1.0-hybrid
Fragaria vesca
gene17116-v1.0-hybrid
I
0.704
PDK_20s1315201g001
Phoenix dactylifera
PDK_20s1315201g001
I
0.701
BRADI3G53270
Brachypodium distachyon
BRADI3G53270
I
0.698
GRMZM2G110109
Zea mays
GRMZM2G110109
I
0.698
Traes_6BL_936B5B999
Triticum aestivum
Traes_6BL_936B5B999
I
0.698
Eucgr.I01546
Eucalyptus grandis
Eucgr.I01546
I
0.696
OBART06G21220
Oryza barthii
OBART06G21220
I
0.691
OGLUM06G22430
Oryza glumaepatula
OGLUM06G22430
I
0.691
OLONG_022248
Oryza longistaminata
OLONG_022248
I
0.691
OMERI01G31330
Oryza meridionalis
OMERI01G31330
I
0.691
ONIVA06G25180
Oryza nivara
ONIVA06G25180
I
0.691
ORUFI06G22870
Oryza rufipogon
ORUFI06G22870
I
0.691
GLYMA16G21840
Glycine max
GLYMA16G21840
I
0.686
PGSC0003DMG400021771
Solanum tuberosum
PGSC0003DMG400021771
I
0.684
Bostr.7128s0681
Boechera stricta
Bostr.7128s0681
I
0.682
ARID3
Arabidopsis thaliana
AT2G17410
D
0.681
fgenesh2_kg.3__3325__AT2G17410.1
Arabidopsis lyrata
fgenesh2_kg.3__3325__AT2G17410.1
I
0.681
GSMUA_AchrUn_randomG12940_001
Musa acuminata
GSMUA_AchrUn_randomG12940_001
I
0.681
Bostr.18351s0201
Boechera stricta
Bostr.18351s0201
I
0.681
Cagra.6788s0003
Capsella grandiflora
Cagra.6788s0003
I
0.681
Carubv10012979m.g
Capsella rubella
Carubv10012979m.g
I
0.681
Thhalv10022553m.g
Eutrema salsugineum
Thhalv10022553m.g
I
0.681
ARID6
Arabidopsis thaliana
AT1G20910
D
0.672
Bra002058
Brassica rapa
Bra002058
I
0.672
fgenesh2_kg.1__2281__AT1G20910.1
Arabidopsis lyrata
fgenesh2_kg.1__2281__AT1G20910.1
I
0.672
Thhalv10007750m.g
Eutrema salsugineum
Thhalv10007750m.g
I
0.672
POPTR_0011s14850
Populus trichocarpa
POPTR_0011s14850
I
0.663
SapurV1A.0047s0480
Salix purpurea
SapurV1A.0047s0480
I
0.663
Cagra.6160s0006
Capsella grandiflora
Cagra.6160s0006
I
0.659
Carubv10009301m.g
Capsella rubella
Carubv10009301m.g
I
0.659
GSMUA_Achr4G19240_001
Musa acuminata
GSMUA_Achr4G19240_001
I
0.651
Solyc12g094730.1
Solanum lycopersicum
Solyc12g094730.1
I
0.650
SELMODRAFT_271464
Selaginella moellendorffii
SELMODRAFT_271464
I
0.649
SELMODRAFT_445202
Selaginella moellendorffii
SELMODRAFT_445202
I
0.649
e_gw1.66.61.1
Physcomitrella patens
e_gw1.66.61.1
I
0.649
Bo7g061260
Brassica oleracea
Bo7g061260
I
0.635
Bra012257
Brassica rapa
Bra012257
I
0.635
POPTR_0001s46070
Populus trichocarpa
POPTR_0001s46070
I
0.628
SapurV1A.0478s0090
Salix purpurea
SapurV1A.0478s0090
I
0.628
GSMUA_Achr3G11660_001
Musa acuminata
GSMUA_Achr3G11660_001
I
0.613
gw1.131.40.1
Physcomitrella patens
gw1.131.40.1
I
0.609
GLYMA05G10756
Glycine max
GLYMA05G10756
I
0.606
Bo5g030830
Brassica oleracea
Bo5g030830
I
0.600
Bo8g070520
Brassica oleracea
Bo8g070520
I
0.600
Bra016443
Brassica rapa
Bra016443
I
0.600
Bra025855
Brassica rapa
Bra025855
I
0.600
LPERR06G17780
Leersia perrieri
LPERR06G17780
I
0.565
Bo7g014510
Brassica oleracea
Bo7g014510
I
0.551
OPUNC06G19340
Oryza punctata
OPUNC06G19340
I
0.551
cassava10018.m1
Manihot esculenta
cassava10018.m1
I
0.488
gene12982-v1.0-hybrid
Fragaria vesca
gene12982-v1.0-hybrid
I
0.485