cassava42790.valid.m1 (Manihot esculenta)
B3

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02362 (B3) IPR003340 cassava42790.valid.m1 T022293_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ARF2
M06714_2.00 		Arabidopsis thaliana
NHTGTCKSHD
HDSMGACADN		 Dap-seq
OMalley et al.(2016)
ARF2_col_v31 		0.775 0.775
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
cassava42790.valid.m1 B3 1 72

Links

Other B3 family TFs
Other Manihot esculenta TFs

122 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
F775_21871 Aegilops tauschii F775_21871 I 0.704
F775_27540 Aegilops tauschii F775_27540 N 0.746
Aquca_003_00899 Aquilegia coerulea Aquca_003_00899 I 0.704
Aquca_008_00175 Aquilegia coerulea Aquca_008_00175 I 0.746
ARF18 Arabidopsis lyrata fgenesh1_pg.C_scaffold_5002633 I 0.873
ARF11 Arabidopsis thaliana AT2G46530 I 0.915
ARF18 Arabidopsis thaliana AT3G61830 I 0.873
Bostr.25993s0113 Boechera stricta Bostr.25993s0113 I 0.915
BRADI3G45880 Brachypodium distachyon BRADI3G45880 I 0.746
Bo01141s010 Brassica oleracea Bo01141s010 I 0.873
Bo3g039330 Brassica oleracea Bo3g039330 I 0.930
Bo4g008150 Brassica oleracea Bo4g008150 I 0.887
Bo8g097320 Brassica oleracea Bo8g097320 I 0.873
Bra004530 Brassica rapa Bra004530 I 0.887
Bra014419 Brassica rapa Bra014419 I 0.873
PK02218.1 Cannabis sativa PK02218.1 I 0.930
PK07904.1 Cannabis sativa PK07904.1 I 0.704
PK12669.1 Cannabis sativa PK12669.1 I 0.789
PK16974.1 Cannabis sativa PK16974.1 I 0.789
PK18282.1 Cannabis sativa PK18282.1 I 0.704
Cagra.0050s0046 Capsella grandiflora Cagra.0050s0046 I 0.859
Carubv10022841m.g Capsella rubella Carubv10022841m.g I 0.859
evm.TU.supercontig_15.1 Carica papaya evm.TU.supercontig_15.1 I 0.873
Ca_05681 Cicer arietinum Ca_05681 I 0.775
Ca_21948 Cicer arietinum Ca_21948 I 0.958
Ca_23296 Cicer arietinum Ca_23296 I 0.887
Cla013021 Citrullus lanatus Cla013021 I 0.915
Cla019614 Citrullus lanatus Cla019614 I 0.789
Ciclev10019131m.g Citrus clementina Ciclev10019131m.g I 0.887
Ciclev10027839m.g Citrus clementina Ciclev10027839m.g I 0.704
Ciclev10030696m.g Citrus clementina Ciclev10030696m.g I 0.775
orange1.1g003580m.g Citrus sinensis orange1.1g003580m.g I 0.704
orange1.1g005491m.g Citrus sinensis orange1.1g005491m.g I 0.913
Cucsa.078800 Cucumis sativus Cucsa.078800 I 0.901
Cucsa.156920 Cucumis sativus Cucsa.156920 I 0.789
Eucgr.B03551 Eucalyptus grandis Eucgr.B03551 I 0.775
Eucgr.D01764 Eucalyptus grandis Eucgr.D01764 I 0.887
Eucgr.G00076 Eucalyptus grandis Eucgr.G00076 I 0.761
Eucgr.K02197 Eucalyptus grandis Eucgr.K02197 I 0.775
gene06434-v1.0-hybrid Fragaria vesca gene06434-v1.0-hybrid I 0.789
GLYMA03G17450 Glycine max GLYMA03G17450 I 0.958
GLYMA07G32300 Glycine max GLYMA07G32300 I 0.704
GLYMA08G01100 Glycine max GLYMA08G01100 I 0.720
GLYMA13G24240 Glycine max GLYMA13G24240 I 0.704
GLYMA15G08540 Glycine max GLYMA15G08540 I 0.704
Gorai.001G054600 Gossypium raimondii Gorai.001G054600 I 0.789
Gorai.007G026900 Gossypium raimondii Gorai.007G026900 I 0.915
Gorai.007G109500 Gossypium raimondii Gorai.007G109500 I 0.871
Gorai.008G126200 Gossypium raimondii Gorai.008G126200 I 0.915
MLOC_64596 Hordeum vulgare MLOC_64596 I 0.761
MLOC_65945 Hordeum vulgare MLOC_65945 I 0.704
chr4.CM0175.280.nc Lotus japonicus chr4.CM0175.280.nc I 0.789
LjSGA_144865.1 Lotus japonicus LjSGA_144865.1 I 0.732
MDP0000258032 Malus domestica MDP0000258032 I 0.789
MDP0000259062 Malus domestica MDP0000259062 N 0.746
cassava42787.valid.m1 Manihot esculenta cassava42787.valid.m1 I 0.724
cassava42788.valid.m1 Manihot esculenta cassava42788.valid.m1 I 0.724
cassava42789.valid.m1 Manihot esculenta cassava42789.valid.m1 I 0.724
cassava43609.valid.m1 Manihot esculenta cassava43609.valid.m1 I 0.930
cassava45422.m1 Manihot esculenta cassava45422.m1 I 0.724
cassava45423.m1 Manihot esculenta cassava45423.m1 I 0.724
cassava45424.m1 Manihot esculenta cassava45424.m1 I 0.724
cassava45425.m1 Manihot esculenta cassava45425.m1 I 0.724
cassava45426.m1 Manihot esculenta cassava45426.m1 I 0.724
cassava6009.valid.m1 Manihot esculenta cassava6009.valid.m1 I 0.718
mgf006511m Mimulus guttatus mgf006511m I 0.789
mgf015308m Mimulus guttatus mgf015308m I 0.789
mgf020855m Mimulus guttatus mgf020855m I 0.775
GSMUA_Achr10G15100_001 Musa acuminata GSMUA_Achr10G15100_001 I 0.831
GSMUA_Achr6G07390_001 Musa acuminata GSMUA_Achr6G07390_001 I 0.761
OBART01G08640 Oryza barthii OBART01G08640 I 0.704
OB12G20020 Oryza brachyantha OB12G20020 I 0.789
ORGLA01G0077700 Oryza glaberrima ORGLA01G0077700 I 0.704
OGLUM01G09880 Oryza glumaepatula OGLUM01G09880 I 0.704
BGIOSGA003093 Oryza indica BGIOSGA003093 I 0.704
OLONG_005875 Oryza longistaminata OLONG_005875 I 0.704
OMERI01G08660 Oryza meridionalis OMERI01G08660 I 0.704
OPUNC01G08500 Oryza punctata OPUNC01G08500 I 0.704
OPUNC04G11520 Oryza punctata OPUNC04G11520 I 0.775
ORUFI01G09450 Oryza rufipogon ORUFI01G09450 I 0.704
ARF1 Oryza sativa OS01G0236300 I 0.704
Pavir.Aa01676 Panicum virgatum Pavir.Aa01676 I 0.775
Pavir.Cb00753 Panicum virgatum Pavir.Cb00753 I 0.775
Pavir.Ea03860 Panicum virgatum Pavir.Ea03860 I 0.803
Pavir.Eb03734 Panicum virgatum Pavir.Eb03734 I 0.803
Pavir.J11622 Panicum virgatum Pavir.J11622 I 0.775
PDK_20s1428911g001 Phoenix dactylifera PDK_20s1428911g001 I 0.707
PDK_20s1477241g001 Phoenix dactylifera PDK_20s1477241g001 I 0.861
PDK_20s1585531g001 Phoenix dactylifera PDK_20s1585531g001 I 0.817
PDK_20s1651081g001 Phoenix dactylifera PDK_20s1651081g001 I 0.767
POPTR_0004s04970 Populus trichocarpa POPTR_0004s04970 I 0.704
POPTR_0004s23770 Populus trichocarpa POPTR_0004s23770 I 0.789
POPTR_0011s05830 Populus trichocarpa POPTR_0011s05830 I 0.704
POPTR_0015s11660 Populus trichocarpa POPTR_0015s11660 I 0.789
XM_002320618.1 Populus trichocarpa POPTR_0020s00210 I 0.732
Pm018352 Prunus mume Pm018352 I 0.915
Pm031349 Prunus mume Pm031349 I 0.704
PRUPE_ppa002065m1g Prunus persica PRUPE_ppa002065m1g I 0.704
PRUPE_ppa002230mg Prunus persica PRUPE_ppa002230mg I 0.915
30068.m002516 Ricinus communis 30068.m002516 I 0.704
SapurV1A.0003s1010 Salix purpurea SapurV1A.0003s1010 I 0.789
SapurV1A.0012s0780 Salix purpurea SapurV1A.0012s0780 I 0.704
SapurV1A.0422s0040 Salix purpurea SapurV1A.0422s0040 I 0.789
Si000340m.g Setaria italica Si000340m.g I 0.803
Si016562m.g Setaria italica Si016562m.g I 0.775
Si021216m.g Setaria italica Si021216m.g I 0.775
Solyc03g118290.2 Solanum lycopersicum Solyc03g118290.2 I 0.789
Sb03g044630 Sorghum bicolor Sb03g044630 I 0.803
TCM_004526 Theobroma cacao TCM_004526 I 0.761
TCM_005126 Theobroma cacao TCM_005126 I 0.944
TCM_029792 Theobroma cacao TCM_029792 I 0.717
Traes_3AS_9594B1341 Triticum aestivum Traes_3AS_9594B1341 N 0.704
TRAES3BF007300580CFD_g Triticum aestivum TRAES3BF007300580CFD_g I 0.704
Traes_3DL_1FC3735D9 Triticum aestivum Traes_3DL_1FC3735D9 I 0.789
Traes_3DL_BC7A7E056 Triticum aestivum Traes_3DL_BC7A7E056 I 0.775
TRIUR3_17755 Triticum urartu TRIUR3_17755 I 0.761
TRIUR3_28704 Triticum urartu TRIUR3_28704 I 0.704
ARF1 Vitis vinifera VIT_12s0035g01800 I 0.789
ARF2 Vitis vinifera VIT_17s0000g00320 I 0.789
GRMZM2G006042 Zea mays GRMZM2G006042 I 0.775
GRMZM2G338259 Zea mays GRMZM2G338259 I 0.803
GRMZM2G702026 Zea mays GRMZM2G702026 I 0.775