PGSC0003DMG400003719 (Solanum tuberosum)
BBR

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF06217 (GAGA_bind) IPR010409 PGSC0003DMG400003719 T024696_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
BPC6
M06719_2.00 		Arabidopsis thaliana
KAGAGAGAGAGAGAGAGAGAG
CTCTCTCTCTCTCTCTCTCTM		 Dap-seq
OMalley et al.(2016)
BPC6_col_a 		0.736 0.736
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
PGSC0003DMT400009534 BBR 1 323
PGSC0003DMT400009535 BBR 1 323
PGSC0003DMT400009536 BBR 5 320
PGSC0003DMT400009537 BBR 5 320

Links

Other BBR family TFs
Other Solanum tuberosum TFs

41 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AMTR_s00185p00053620 Amborella trichopoda AMTR_s00185p00053620 I 0.862
BPC6 Arabidopsis lyrata fgenesh1_pm.C_scaffold_8000489 I 0.738
BPC6 Arabidopsis thaliana AT5G42520 D 0.736
Bostr.3148s0250 Boechera stricta Bostr.3148s0250 I 0.758
Bo6g076850 Brassica oleracea Bo6g076850 I 0.725
Bo3g149640 Brassica oleracea Bo3g149640 I 0.745
Bra003405 Brassica rapa Bra003405 I 0.752
PK03443.1 Cannabis sativa PK03443.1 I 0.755
Cagra.9562s0001 Capsella grandiflora Cagra.9562s0001 I 0.738
Carubv10026720m.g Capsella rubella Carubv10026720m.g I 0.740
Ca_10756 Cicer arietinum Ca_10756 N 0.716
Cla022781 Citrullus lanatus Cla022781 I 0.756
Ciclev10001400m.g Citrus clementina Ciclev10001400m.g I 0.777
orange1.1g018368m.g Citrus sinensis orange1.1g018368m.g I 0.777
Cucsa.159750 Cucumis sativus Cucsa.159750 I 0.781
Eucgr.D01054 Eucalyptus grandis Eucgr.D01054 I 0.766
Thhalv10006075m.g Eutrema salsugineum Thhalv10006075m.g I 0.751
gene08483-v1.0-hybrid Fragaria vesca gene08483-v1.0-hybrid I 0.784
GLYMA06G02880 Glycine max GLYMA06G02880 I 0.792
GLYMA04G02860 Glycine max GLYMA04G02860 I 0.799
Gorai.002G124900 Gossypium raimondii Gorai.002G124900 I 0.761
Lus10012389.g Linum usitatissimum Lus10012389.g I 0.784
Lus10024313.g Linum usitatissimum Lus10024313.g I 0.773
chr1.CM0195.10.nd Lotus japonicus chr1.CM0195.10.nd I 0.784
MDP0000947167 Malus domestica MDP0000947167 I 0.735
MDP0000933138 Malus domestica MDP0000933138 I 0.765
cassava22532.valid.m1 Manihot esculenta cassava22532.valid.m1 I 0.781
MTR_1g023660 Medicago truncatula MTR_1g023660 I 0.736
mgf000855m Mimulus guttatus mgf000855m N 0.732
Ocbimv22014894m.g Octopus bimaculoides Ocbimv22014894m.g I 1.000
POPTR_0005s25720 Populus trichocarpa POPTR_0005s25720 I 0.784
POPTR_0002s02820 Populus trichocarpa POPTR_0002s02820 I 0.799
Pm006246 Prunus mume Pm006246 I 0.791
PRUPE_ppa008316mg Prunus persica PRUPE_ppa008316mg I 0.788
30170.m014145 Ricinus communis 30170.m014145 I 0.770
SapurV1A.0025s0690 Salix purpurea SapurV1A.0025s0690 I 0.788
SapurV1A.0762s0100 Salix purpurea SapurV1A.0762s0100 I 0.781
Solyc04g081170.2 Solanum lycopersicum Solyc04g081170.2 I 0.985
TCM_034171 Theobroma cacao TCM_034171 I 0.766
VIT_18s0001g13730 Vitis vinifera VIT_18s0001g13730 I 0.796