Cagra.0690s0016 (Capsella grandiflora)
BED ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02892 (zf-BED) IPR003656 Cagra.0690s0016 T028205_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Cagra.0690s0016.1.p BED ZF 48 79
Cagra.0690s0016.1.p BED ZF 111 143

Links

Other BED ZF family TFs
Other Capsella grandiflora TFs

5 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSAMEG00000011823 Ailuropoda melanoleuca ENSAMEG00000011823 I
Alligator_sinensis_CCG017947.1 Alligator sinensis Alligator_sinensis_CCG017947.1 I
Aqu1.204705 Amphimedon queenslandica Aqu1.204705 I
Aqu1.224590 Amphimedon queenslandica Aqu1.224590 I
Aqu1.203581 Amphimedon queenslandica Aqu1.203581 I
DNMT1 Anolis carolinensis ENSACAG00000003948 I
GB47348 Apis mellifera GB47348 I
GB48403 Apis mellifera GB48403 I
Afo_R010037 Aptenodytes forsteri Afo_R010037 I
ENSAMXG00000012182 Astyanax mexicanus ENSAMXG00000012182 I
ENSP00000352516-D1 Bos grunniens ENSP00000352516-D1 I
DNMT1 Bos taurus ENSBTAG00000002736 I
e_gw.24.105.1 Branchiostoma floridae e_gw.24.105.1 I
DNMT1 Callithrix jacchus ENSCJAG00000005794 I
Aan_R006371 Calypte anna Aan_R006371 I
Cflo_12808--XP_001122269.1_APIME Camponotus floridanus Cflo_12808--XP_001122269.1_APIME I
DNMT1 Canis familiaris ENSCAFG00000017892 I
CapteG160905 Capitella teleta CapteG160905 I
DNMT1 Cavia porcellus ENSCPOG00000019557 I
Cmyd_10002310 Chelonia mydas Cmyd_10002310 I
ENSCSAG00000007378 Chlorocebus sabaeus ENSCSAG00000007378 I
DNMT1 Choloepus hoffmanni ENSCHOG00000009490 I
CGI_10021920 Crassostrea gigas CGI_10021920 I
dnmt1 Danio rerio ENSDARG00000030756 I
DNMT1 Dasypus novemcinctus ENSDNOG00000003313 I
DNMT1 Echinops telfairi ENSETEG00000012574 I
DNMT1 Equus caballus ENSECAG00000026909 I
DNMT1 Felis catus ENSFCAG00000012246 I
ENSFALG00000007760 Ficedula albicollis ENSFALG00000007760 I
ENSGMOG00000003491 Gadus morhua ENSGMOG00000003491 I
ENSGALG00000028997 Gallus gallus ENSGALG00000028997 I
dnmt1 Gasterosteus aculeatus ENSGACG00000013741 I
Gfo_R002685 Geospiza fortis Gfo_R002685 I
DNMT1 Gorilla gorilla ENSGGOG00000016574 I
HelroG116156 Helobdella robusta HelroG116156 I
DNMT1 Homo sapiens ENSG00000130816 D
XP_002155714.1 Hydra magnipapillata XP_002155714.1 I
ENSSTOG00000010841 Ictidomys tridecemlineatus ENSSTOG00000010841 I
ENSLOCG00000007421 Lepisosteus oculatus ENSLOCG00000007421 I
LotgiG171288 Lottia gigantea LotgiG171288 I
DNMT1 Loxodonta africana ENSLAFG00000002818 I
ENSP00000352516 Macaca fascicularis ENSP00000352516 I
DNMT1 Macaca mulatta ENSMMUG00000014604 I
ENSMEUG00000012650 Macropus eugenii ENSMEUG00000012650 I
DNMT1 Microcebus murinus ENSMICG00000010231 I
DNMT1 Monodelphis domestica ENSMODG00000005463 I
ENSMPUG00000006829 Mustela putorius furo ENSMPUG00000006829 I
Dnmt1 Mus musculus ENSMUSG00000004099 I
Myotis_brandtii_DNMT1_10007965 Myotis brandtii Myotis_brandtii_DNMT1_10007965 I
DNMT1 Myotis lucifugus ENSMLUG00000001347 I
NV11649 Nasonia vitripennis NV11649 I
ENSNLEG00000012092 Nomascus leucogenys ENSNLEG00000012092 I
DNMT1 Ochotona princeps ENSOPRG00000007032 I
Ocbimv22034501m.g Octopus bimaculoides Ocbimv22034501m.g I
Ogr12994 Ophisaurus gracilis Ogr12994 I
ENSONIG00000001574 Oreochromis niloticus ENSONIG00000001574 I
ENSOANG00000012255 Ornithorhynchus anatinus ENSOANG00000012255 I
ENSOCUG00000008415 Oryctolagus cuniculus ENSOCUG00000008415 I
dnmt1 Oryzias latipes ENSORLG00000005582 I
DNMT1 Otolemur garnettii ENSOGAG00000001265 I
ENSOARG00000015380 Ovis aries ENSOARG00000015380 I
DNMT1 Pan troglodytes ENSPTRG00000010461 I
ENSPANG00000001264 Papio anubis ENSPANG00000001264 I
ENSPSIG00000002916 Pelodiscus sinensis ENSPSIG00000002916 I
ENSPFOG00000005624 Poecilia formosa ENSPFOG00000005624 I
Pvit_03471 Pogona vitticeps Pvit_03471 I
ENSPPYG00000009545 Pongo abelii ENSPPYG00000009545 I
DNMT1 Procavia capensis ENSPCAG00000011023 I
DNMT1 Pteropus vampyrus ENSPVAG00000003676 I
Dnmt1 Rattus norvegicus ENSRNOG00000039859 I
Sakowv30005306m.g Saccoglossus kowalevskii Sakowv30005306m.g I
ENSSHAG00000008894 Sarcophilus harrisii ENSSHAG00000008894 I
DNMT1 Sus scrofa ENSSSCG00000013659 I
ENSTGUG00000013708 Taeniopygia guttata ENSTGUG00000013708 I
dnmt1 Takifugu rubripes ENSTRUG00000008132 I
dnmt1 Tetraodon nigroviridis ENSTNIG00000018567 I
DNMT1 Tursiops truncatus ENSTTRG00000003178 I
DNMT1 Vicugna pacos ENSVPAG00000006117 I
dnmt1.S Xenopus laevis XB-GENE-17332488 I
dnmt1.L Xenopus laevis XB-GENE-965566 I
dnmt1 Xenopus tropicalis XB-GENE-965562 I
ENSXMAG00000018063 Xiphophorus maculatus ENSXMAG00000018063 I