Pavir.J18772 (Panicum virgatum)
BED ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02892 (zf-BED) IPR003656 Pavir.J18772 T028590_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.J18772.1.p BED ZF 27 76

Links

Other BED ZF family TFs
Other Panicum virgatum TFs

8 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSAPLG00000014876 Anas platyrhynchos ENSAPLG00000014876 N
ENSBTAP00000020376-D1 Bos grunniens ENSBTAP00000020376-D1 N
TRERF1 Bos taurus ENSBTAG00000015321 N
TRERF1 Callithrix jacchus ENSCJAG00000004347 N
Aan_R011464 Calypte anna Aan_R011464 N
TRERF1 Canis familiaris ENSCAFG00000001642 N
TRERF1 Cavia porcellus ENSCPOG00000015717 N
Cmyd_10010458 Chelonia mydas Cmyd_10010458 N
TRERF1 Choloepus hoffmanni ENSCHOG00000006120 N
TRERF1 Equus caballus ENSECAG00000016971 N
TRERF1 Felis catus ENSFCAG00000011210 N
ENSFALG00000012590 Ficedula albicollis ENSFALG00000012590 N
TRERF1 Gallus gallus ENSGALG00000009896 N
TRERF1 Gorilla gorilla ENSGGOG00000012813 N
TRERF1 Homo sapiens ENSG00000124496 N
ENSSTOG00000022996 Ictidomys tridecemlineatus ENSSTOG00000022996 N
TRERF1 Loxodonta africana ENSLAFG00000007825 N
ENSP00000362013 Macaca fascicularis ENSP00000362013 N
TRERF1 Meleagris gallopavo ENSMGAG00000013894 N
TRERF1 Monodelphis domestica ENSMODG00000019042 N
ENSMPUG00000013360 Mustela putorius furo ENSMPUG00000013360 N
Myotis_brandtii_Trerf1_10015386 Myotis brandtii Myotis_brandtii_Trerf1_10015386 N
TRERF1 Myotis lucifugus ENSMLUG00000016748 N
ENSNLEG00000004772 Nomascus leucogenys ENSNLEG00000004772 N
Ogr07462 Ophisaurus gracilis Ogr07462 N
TRERF1 Ornithorhynchus anatinus ENSOANG00000008467 N
TRERF1 Otolemur garnettii ENSOGAG00000025610 N
ENSOARG00000003358 Ovis aries ENSOARG00000003358 N
ENSPANG00000009451 Papio anubis ENSPANG00000009451 N
ENSPSIG00000009755 Pelodiscus sinensis ENSPSIG00000009755 N
ENSPPYG00000016614 Pongo abelii ENSPPYG00000016614 N
TRERF1 Pteropus vampyrus ENSPVAG00000007626 N
Trerf1 Rattus norvegicus ENSRNOG00000022598 N
ENSSHAG00000004599 Sarcophilus harrisii ENSSHAG00000004599 N
TRERF1 Sus scrofa ENSSSCG00000001639 N
TRERF1 Taeniopygia guttata ENSTGUG00000003250 N
ENSTSYG00000003874 Tarsius syrichta ENSTSYG00000003874 N
ENSTBEG00000012133 Tupaia belangeri ENSTBEG00000012133 N
TRERF1 Tursiops truncatus ENSTTRG00000014065 N