CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Thhalv10020233m.g
(
Eutrema salsugineum
)
BED ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF02892 (zf-BED)
IPR003656
Thhalv10020233m.g
T028722_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Thhalv10020233m
BED ZF
17
68
SVVWNYFERVRKADVCYAVCIQCNKKLSGSSNSGTTHLRNHLMRCLKRTNHD
Links
Other
BED ZF
family TFs
Other
Eutrema salsugineum
TFs
29 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Aquca_039_00001
Aquilegia coerulea
Aquca_039_00001
N
0.727
Bostr.28625s0227
Boechera stricta
Bostr.28625s0227
N
1.000
Bo9g044150
Brassica oleracea
Bo9g044150
N
0.955
Bo1g129970
Brassica oleracea
Bo1g129970
N
1.000
PK13949.1
Cannabis sativa
PK13949.1
N
0.705
PK12364.1
Cannabis sativa
PK12364.1
N
0.750
Cagra.0007s0024
Capsella grandiflora
Cagra.0007s0024
N
1.000
Carubv10013145m.g
Capsella rubella
Carubv10013145m.g
N
1.000
Cucsa.057910
Cucumis sativus
Cucsa.057910
N
0.795
Eucgr.K01194
Eucalyptus grandis
Eucgr.K01194
N
0.727
gene27341-v1.0-hybrid
Fragaria vesca
gene27341-v1.0-hybrid
N
0.750
GLYMA09G15135
Glycine max
GLYMA09G15135
N
0.773
GLYMA15G27362
Glycine max
GLYMA15G27362
N
0.773
Gorai.007G331900
Gossypium raimondii
Gorai.007G331900
N
0.773
Gorai.004G271300
Gossypium raimondii
Gorai.004G271300
N
0.795
Lus10005558.g
Linum usitatissimum
Lus10005558.g
N
0.773
cassava7664.valid.m1
Manihot esculenta
cassava7664.valid.m1
N
0.841
cassava7665.valid.m1
Manihot esculenta
cassava7665.valid.m1
N
0.841
POPTR_0011s10500
Populus trichocarpa
POPTR_0011s10500
N
0.750
POPTR_0001s39240
Populus trichocarpa
POPTR_0001s39240
N
0.750
Pm011252
Prunus mume
Pm011252
N
0.773
PRUPE_ppa002416mg
Prunus persica
PRUPE_ppa002416mg
N
0.773
SapurV1A.0020s0660
Salix purpurea
SapurV1A.0020s0660
N
0.750
SapurV1A.0026s0130
Salix purpurea
SapurV1A.0026s0130
N
0.727
Solyc10g007470.2
Solanum lycopersicum
Solyc10g007470.2
N
0.773
PGSC0003DMG400021296
Solanum tuberosum
PGSC0003DMG400021296
N
0.773
TCM_032128
Theobroma cacao
TCM_032128
N
0.818
VIT_19s0014g00320
Vitis vinifera
VIT_19s0014g00320
N
0.795
VIT_12s0142g00390
Vitis vinifera
VIT_12s0142g00390
N
0.727