ptf1a (Danio rerio)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00010 (HLH) IPR001092 ENSDARG00000014479 T033641_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PTF1A
M04156_2.00 		Homo sapiens
AACAGCTGACRB
VYGTCAGCTGTT		 SELEX
Yin et al.(2017)
PTF1A_eDBD_HT-SELEX 		0.890 0.981
PTF1A
M08736_2.00 		Homo sapiens
SCAGCTGBYNBNNYYYHN
NDRRRNNVNRVCAGCTGS		 Misc
Kulakovskiy et al.(2013)
PTF1A_HUMAN.H11MO.0.B 		0.890 0.981
Ptf1a
M08757_2.00 		Mus musculus
SCAGCTGBYNBNNYYYHN
NDRRRNNVNRVCAGCTGS		 Misc
Kulakovskiy et al.(2013)
PTF1A_MOUSE.H11MO.0.A 		0.890 0.981
Ptf1a
M09470_2.00 		Mus musculus
NVVCASSTGB
VCASSTGBBN		 Misc
Heinz et al.(2010)
Panc1-Ptf1a_GSE47459 		0.890 0.981
PTF1A
M04157_2.00 		Homo sapiens
AMCAGCTGACRB
VYGTCAGCTGKT		 SELEX
Yin et al.(2017)
PTF1A_eDBD_Methyl-HT-SELEX 		0.890 0.981
Fer1
M03620_2.00 		Drosophila melanogaster
VDCASCTGHY
RDCAGSTGHB		 SELEX
Nitta et al.(2015)
Fer1_1 		0.870 0.846
Fer1
M05990_2.00 		Drosophila melanogaster
HVCASMTGWCV
BGWCAKSTGBD		 B1H
Zhu et al.(2011)
Fer1_da_SANGER_10_FBgn0037475 		0.870 0.846
Fer1
M05991_2.00 		Drosophila melanogaster
WYRHCAGCTGACG
CGTCAGCTGDYRW		 B1H
Zhu et al.(2011)
Fer1_SANGER_5_FBgn0037475 		0.870 0.846
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSDARP00000011265 bHLH 116 168

Links

Other bHLH family TFs
Other Danio rerio TFs

132 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
M378DRAFT_75687 Amanita muscaria M378DRAFT_75687 N
CERSUDRAFT_137619 Ceriporiopsis subvermispora CERSUDRAFT_137619 N
DICSQDRAFT_64693 Dichomitus squalens DICSQDRAFT_64693 N
FIBRA_07605 Fibroporia radiculosa FIBRA_07605 N
GALMADRAFT_246384 Galerina marginata GALMADRAFT_246384 N
GLOTRDRAFT_65551 Gloeophyllum trabeum GLOTRDRAFT_65551 N
GYMLUDRAFT_50070 Gymnopus luxurians GYMLUDRAFT_50070 N
M413DRAFT_18957 Hebeloma cylindrosporum M413DRAFT_18957 N
HETIRDRAFT_479833 Heterobasidion irregulare HETIRDRAFT_479833 N
HYDPIDRAFT_99795 Hydnomerulius pinastri HYDPIDRAFT_99795 N
JAAARDRAFT_38766 Jaapia argillacea JAAARDRAFT_38766 N
K443DRAFT_129361 Laccaria amethystina K443DRAFT_129361 N
LACBIDRAFT_317073 Laccaria bicolor LACBIDRAFT_317073 N
Moror_4655 Moniliophthora roreri Moror_4655 N
PAXRUDRAFT_144589 Paxillus rubicundulus PAXRUDRAFT_144589 N
PHACADRAFT_254069 Phanerochaete carnosa PHACADRAFT_254069 N
fgenesh1_pg.C_scaffold_5000072 Phanerochaete chrysosporium fgenesh1_pg.C_scaffold_5000072 N
PHLGIDRAFT_78080 Phlebiopsis gigantea PHLGIDRAFT_78080 N
PILCRDRAFT_810475 Piloderma croceum PILCRDRAFT_810475 N
PISMIDRAFT_672167 Pisolithus microcarpus PISMIDRAFT_672167 N
M404DRAFT_15942 Pisolithus tinctorius M404DRAFT_15942 N
PLEOSDRAFT_1073145 Pleurotus ostreatus PLEOSDRAFT_1073145 N
POSPLDRAFT_100778 Postia placenta POSPLDRAFT_100778 N
SCHCODRAFT_257495 Schizophyllum commune SCHCODRAFT_257495 N
SCLCIDRAFT_114536 Scleroderma citrinum SCLCIDRAFT_114536 N
M408DRAFT_28343 Serendipita vermifera M408DRAFT_28343 N
SERLA73DRAFT_117697 Serpula lacrymans SERLA73DRAFT_117697 N
CY34DRAFT_772225 Suillus luteus CY34DRAFT_772225 N