CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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PTF1A
(
Homo sapiens
)
bHLH
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00010 (HLH)
IPR001092
ENSG00000168267
T034310_2.00
Ensembl (2018-Dec-8)
Link out
NCBI Gene Info:
This gene encodes a protein that is a component of the pancreas transcription factor 1 complex (PTF1) and is known to have a role in mammalian pancreatic development. The protein plays a role in determining whether cells allocated to the pancreatic buds continue towards pancreatic organogenesis or revert back to duodenal fates. The protein is thought to be involved in the maintenance of exocrine pancreas-specific gene expression including elastase 1 and amylase. Mutations in this gene cause cerebellar agenesis and loss of expression is seen in ductal type pancreas cancers. [provided by RefSeq, Jul 2008]
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
PTF1A
M04156_2.00
Homo sapiens
AACAGCTGACRB
VYGTCAGCTGTT
SELEX
Yin et al.(2017)
PTF1A_eDBD_HT-SELEX
(Direct)
(Direct)
PTF1A
M04157_2.00
Homo sapiens
AMCAGCTGACRB
VYGTCAGCTGKT
SELEX
Yin et al.(2017)
PTF1A_eDBD_Methyl-HT-SELEX
(Direct)
(Direct)
PTF1A
M08736_2.00
Homo sapiens
SCAGCTGBYNBNNYYYHN
NDRRRNNVNRVCAGCTGS
Misc
Kulakovskiy et al.(2013)
PTF1A_HUMAN.H11MO.0.B
(Direct)
(Direct)
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
Ptf1a
M08757_2.00
Mus musculus
SCAGCTGBYNBNNYYYHN
NDRRRNNVNRVCAGCTGS
Misc
Kulakovskiy et al.(2013)
PTF1A_MOUSE.H11MO.0.A
0.914
1.000
Ptf1a
M09470_2.00
Mus musculus
NVVCASSTGB
VCASSTGBBN
Misc
Heinz et al.(2010)
Panc1-Ptf1a_GSE47459
0.914
1.000
Fer1
M03620_2.00
Drosophila melanogaster
VDCASCTGHY
RDCAGSTGHB
SELEX
Nitta et al.(2015)
Fer1_1
0.894
0.865
Fer1
M05990_2.00
Drosophila melanogaster
HVCASMTGWCV
BGWCAKSTGBD
B1H
Zhu et al.(2011)
Fer1_da_SANGER_10_FBgn0037475
0.894
0.865
Fer1
M05991_2.00
Drosophila melanogaster
WYRHCAGCTGACG
CGTCAGCTGDYRW
B1H
Zhu et al.(2011)
Fer1_SANGER_5_FBgn0037475
0.894
0.865
For this family, TFs with SR scores >
0.838
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSP00000365687
bHLH
164
216
LRQAANVRERRRMQSINDAFEGLRSHIPTLPYEKRLSKVDTLRLAIGYINFLS
Links
Other
bHLH
family TFs
Other
Homo sapiens
TFs
131 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
ENSNLEG00000012897
Nomascus leucogenys
ENSNLEG00000012897
I
0.914
PTF1A
Otolemur garnettii
ENSOGAG00000024685
I
0.914
YQE_02105
Dendroctonus ponderosae
YQE_02105
I
0.914
TC014105
Tribolium castaneum
TC014105
I
0.914
PTF1A
Monodelphis domestica
ENSMODG00000008946
I
0.914
PTF1A
Myotis lucifugus
ENSMLUG00000010122
I
0.914
ENSLACG00000013727
Latimeria chalumnae
ENSLACG00000013727
I
0.914
PTF1A
Loxodonta africana
ENSLAFG00000012682
I
0.914
Pvit_04136
Pogona vitticeps
Pvit_04136
I
0.914
ENSMEUG00000004292
Macropus eugenii
ENSMEUG00000004292
I
0.914
ENSPANG00000023093
Papio anubis
ENSPANG00000023093
I
0.914
PTF1A
Procavia capensis
ENSPCAG00000005440
I
0.914
ENSTGUG00000001180
Taeniopygia guttata
ENSTGUG00000001180
I
0.914
PHUM498120
Pediculus humanus
PHUM498120
I
0.914
PTF1A
Tursiops truncatus
ENSTTRG00000016843
I
0.914
L798_11980
Zootermopsis nevadensis
L798_11980
I
0.914
ENSSTOG00000022679
Ictidomys tridecemlineatus
ENSSTOG00000022679
I
0.914
PTF1A
Sus scrofa
ENSSSCG00000030662
I
0.914
ENSPPYG00000002150
Pongo abelii
ENSPPYG00000002150
I
0.914
ENSPSIG00000007810
Pelodiscus sinensis
ENSPSIG00000007810
I
0.914
ENSPVAG00000013738
Pteropus vampyrus
ENSPVAG00000013738
I
0.914
Ptf1a
Rattus norvegicus
ENSRNOG00000016902
I
0.914
estExt_fgenesh2_pg.C_640081
Branchiostoma floridae
estExt_fgenesh2_pg.C_640081
I
0.914
Ptf1a
Mus musculus
ENSMUSG00000026735
D
0.914
PTF1A
Bos taurus
ENSBTAG00000047315
I
0.914
PTF1A
Callithrix jacchus
ENSCJAG00000007862
I
0.914
ptf1a.S
Xenopus laevis
XB-GENE-6466546
I
0.914
ENSAMEG00000006374
Ailuropoda melanoleuca
ENSAMEG00000006374
I
0.914
PTF1A
Gorilla gorilla
ENSGGOG00000015210
I
0.914
ptf1a
Xenopus tropicalis
XB-GENE-484425
I
0.914
PTF1A
Cavia porcellus
ENSCPOG00000022828
I
0.914
BGLB003958
Biomphalaria glabrata
BGLB003958
I
0.914
ENSFALG00000007280
Ficedula albicollis
ENSFALG00000007280
I
0.914
estExt_GenewiseH_1.C_3210010
Branchiostoma floridae
estExt_GenewiseH_1.C_3210010
I
0.914
PTF1A
Equus caballus
ENSECAG00000012711
I
0.914
PTF1A
Dasypus novemcinctus
ENSDNOG00000035978
I
0.914
ENSCSAG00000012422
Chlorocebus sabaeus
ENSCSAG00000012422
I
0.914
estExt_GenewiseH_1.C_3210011
Branchiostoma floridae
estExt_GenewiseH_1.C_3210011
I
0.914
LDEC016362
Leptinotarsa decemlineata
LDEC016362
I
0.914
PTF1A
Anolis carolinensis
ENSACAG00000008717
I
0.913
GA27498
Drosophila pseudoobscura
FBgn0248864
I
0.894
GI23061
Drosophila mojavensis
FBgn0145788
I
0.894
GH19006
Drosophila grimshawi
FBgn0126473
I
0.894
GG13863
Drosophila erecta
FBgn0106126
I
0.894
GL12422
Drosophila persimilis
FBgn0150028
I
0.894
GE24907
Drosophila yakuba
FBgn0242002
I
0.894
GM10936
Drosophila sechellia
FBgn0165881
I
0.894
GJ24574
Drosophila virilis
FBgn0211653
I
0.894
GK14521
Drosophila willistoni
FBgn0216527
I
0.894
GF17655
Drosophila ananassae
FBgn0094673
I
0.894
GD19915
Drosophila simulans
FBgn0191398
I
0.894
CGI_10017809
Crassostrea gigas
CGI_10017809
I
0.894
Fer1
Drosophila melanogaster
FBgn0037475
D
0.894
CLEC012470
Cimex lectularius
CLEC012470
I
0.894
Sakowv30041452m.g
Saccoglossus kowalevskii
Sakowv30041452m.g
I
0.894
RPRC001881
Rhodnius prolixus
RPRC001881
I
0.894
LCUP002382
Lucilia cuprina
LCUP002382
I
0.894
ACYPI37626
Acyrthosiphon pisum
ACYPI37626
I
0.894
MDOA013156
Musca domestica
MDOA013156
I
0.894
KGM_14030
Danaus plexippus
KGM_14030
I
0.890
D917_00545
Trichinella nativa
D917_00545
I
0.890
SMAR011911
Strigamia maritima
SMAR011911
I
0.890
SMAR009985
Strigamia maritima
SMAR009985
I
0.890
LotgiG66849
Lottia gigantea
LotgiG66849
I
0.890
ISCW003737
Ixodes scapularis
ISCW003737
I
0.890
ENSLOCG00000003186
Lepisosteus oculatus
ENSLOCG00000003186
I
0.890
ENSONIG00000016978
Oreochromis niloticus
ENSONIG00000016978
I
0.890
ptf1a
Oryzias latipes
ENSORLG00000008277
I
0.890
ENSGMOG00000016849
Gadus morhua
ENSGMOG00000016849
I
0.890
ptf1a
Danio rerio
ENSDARG00000014479
I
0.890
DAPPUDRAFT_18360
Daphnia pulex
DAPPUDRAFT_18360
I
0.890
EFV58245
Trichinella spiralis
EFV58245
I
0.890
ENSAMXG00000008222
Astyanax mexicanus
ENSAMXG00000008222
I
0.890
ENSPFOG00000002486
Poecilia formosa
ENSPFOG00000002486
I
0.890
ptf1a
Gasterosteus aculeatus
ENSGACG00000014760
I
0.890
ENSXMAG00000015151
Xiphophorus maculatus
ENSXMAG00000015151
I
0.890
ptf1a
Takifugu rubripes
ENSTRUG00000007713
I
0.890
PTF1A
Tupaia belangeri
ENSTBEG00000005210
I
0.879
AQUA006634
Anopheles quadriannulatus
AQUA006634
I
0.870
ADAC008497
Anopheles darlingi
ADAC008497
I
0.870
LLOJ003726
Lutzomyia longipalpis
LLOJ003726
I
0.870
AMIN003266
Anopheles minimus
AMIN003266
I
0.870
ASIS019386
Anopheles sinensis
ASIS019386
I
0.870
AMEC009154
Anopheles melas
AMEC009154
I
0.870
AFAF002909
Anopheles farauti
AFAF002909
I
0.870
AFUN008310
Anopheles funestus
AFUN008310
I
0.870
AMAM018725
Anopheles maculatus
AMAM018725
I
0.870
LLOJ004204
Lutzomyia longipalpis
LLOJ004204
I
0.870
AMEM011331
Anopheles merus
AMEM011331
I
0.870
TTRE_0000022101
Trichuris trichiura
TTRE_0000022101
I
0.870
SROB_0001629701
Schistosoma rodhaini
SROB_0001629701
I
0.870
D915_00775
Fasciola hepatica
D915_00775
I
0.870
AAEL008660
Aedes aegypti
AAEL008660
I
0.870
ECPE_0000418201
Echinostoma caproni
ECPE_0000418201
I
0.870
AEPI006242
Anopheles epiroticus
AEPI006242
I
0.870
T265_12589
Opisthorchis viverrini
T265_12589
I
0.870
PPAI005132
Phlebotomus papatasi
PPAI005132
I
0.870
D918_01499
Trichuris suis
D918_01499
I
0.870
TMUE_s0036001100
Trichuris muris
TMUE_s0036001100
I
0.870
csin111295
Clonorchis sinensis
csin111295
I
0.870
LLOJ005004
Lutzomyia longipalpis
LLOJ005004
I
0.870
ACHR004799
Anopheles christyi
ACHR004799
I
0.870
ADIR010545
Anopheles dirus
ADIR010545
I
0.870
CPIJ006258
Culex quinquefasciatus
CPIJ006258
I
0.870
SMU15024587
Schmidtea mediterranea
SMU15024587
I
0.870
ENSPMAG00000003727
Petromyzon marinus
ENSPMAG00000003727
I
0.870
NEMVEDRAFT_v1g97005
Nematostella vectensis
NEMVEDRAFT_v1g97005
I
0.870
HelroG86431
Helobdella robusta
HelroG86431
I
0.870
MESCA008421
Megaselia scalaris
MESCA008421
I
0.870
SMU15028020
Schmidtea mediterranea
SMU15028020
I
0.870
Ocbimv22012139m.g
Octopus bimaculoides
Ocbimv22012139m.g
I
0.870
AATE014019
Anopheles atroparvus
AATE014019
I
0.870
CpipJ_CPIJ006258
Culex pipiens
CpipJ_CPIJ006258
I
0.870
AALB002674
Anopheles albimanus
AALB002674
I
0.870
AARA001906
Anopheles arabiensis
AARA001906
I
0.870
ACOM034154
Anopheles coluzzii
ACOM034154
I
0.870
ACUA004590
Anopheles culicifacies
ACUA004590
I
0.870
AGAP001448
Anopheles gambiae
AGAP001448
I
0.870
SMU15033768
Schmidtea mediterranea
SMU15033768
I
0.869
SBAD_0000858001
Soboliphyme baturini
SBAD_0000858001
I
0.868
HmN_000218700
Hymenolepis microstoma
HmN_000218700
I
0.866
SPU_002677
Strongylocentrotus purpuratus
SPU_002677
I
0.866
DILT_0001058801
Diphyllobothrium latum
DILT_0001058801
I
0.857
ACEP14483
Atta cephalotes
ACEP14483
I
0.855
GB41913
Apis mellifera
GB41913
I
0.855
Hsal_01096--XP_001120922.1_APIME
Harpegnathos saltator
Hsal_01096--XP_001120922.1_APIME
I
0.855
Cflo_06174--XP_001120620.1_APIME
Camponotus floridanus
Cflo_06174--XP_001120620.1_APIME
I
0.855
CapteG59283
Capitella teleta
CapteG59283
I
0.846
ECANG7_07852
Echinococcus canadensis
ECANG7_07852
I
0.846
MCOS_0000879301
Mesocestoides corti
MCOS_0000879301
I
0.846
EmuJ_000998300
Echinococcus multilocularis
EmuJ_000998300
I
0.846