Clock (Rattus norvegicus)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00010 (HLH) IPR001092 ENSRNOG00000002175 T037165_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Clock
M01735_2.00 		Mus musculus
NNCAYRTGNN
NNCAYRTGNN		 PBM
Weirauch et al.(2014)
pTH5056 		0.914 1.000
CLOCK
M02789_2.00 		Homo sapiens
DACACGTGYH
DRCACGTGTH		 SELEX
Jolma et al.(2013)
CLOCK_1 		0.914 1.000
CLOCK
M04129_2.00 		Homo sapiens
NMCACGTGYN
NRCACGTGKN		 SELEX
Yin et al.(2017)
CLOCK_eDBD_HT-SELEX 		0.914 1.000
CLOCK
M08728_2.00 		Homo sapiens
DBBBCAYKTGNNHB
VDNNCAMRTGVVVH		 Misc
Kulakovskiy et al.(2013)
CLOCK_HUMAN.H11MO.0.C 		0.914 1.000
Clock
M08760_2.00 		Mus musculus
DBBBCAYKTGNNHB
VDNNCAMRTGVVVH		 Misc
Kulakovskiy et al.(2013)
CLOCK_MOUSE.H11MO.0.C 		0.914 1.000
Clock
M09473_2.00 		Mus musculus
CACGTGNN
NNCACGTG		 Misc
Heinz et al.(2010)
Liver-Clock_GSE39860 		0.914 1.000
CLOCK
M09849_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$CLOCK_Q6 		0.914 1.000
CLOCK
M04130_2.00 		Homo sapiens
NRCRCRTGBH
DVCAYGYGYN		 SELEX
Yin et al.(2017)
CLOCK_eDBD_Methyl-HT-SELEX 		0.914 1.000
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSRNOP00000002976 bHLH 35 85
ENSRNOP00000002981 bHLH 35 85
ENSRNOP00000074670 bHLH 35 85

Links

Other bHLH family TFs
Other Rattus norvegicus TFs

78 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSAMEG00000015432 Ailuropoda melanoleuca ENSAMEG00000015432 I
ENSAMEG00000006980 Ailuropoda melanoleuca ENSAMEG00000006980 I
ZKSCAN2 Bos taurus ENSBTAG00000011162 I
ZSCAN29 Callithrix jacchus ENSCJAG00000002903 I
ZKSCAN2 Callithrix jacchus ENSCJAG00000020749 I
ZKSCAN2 Canis familiaris ENSCAFG00000017477 I
ENSCPOG00000005222 Cavia porcellus ENSCPOG00000005222 I
ENSCSAG00000006472 Chlorocebus sabaeus ENSCSAG00000006472 I
ZSCAN29 Choloepus hoffmanni ENSCHOG00000009706 I
ZKSCAN2 Choloepus hoffmanni ENSCHOG00000013904 I
ZKSCAN2 Dasypus novemcinctus ENSDNOG00000044830 I
ZSCAN29 Dasypus novemcinctus ENSDNOG00000018427 I
ZSCAN29 Equus caballus ENSECAG00000012289 I
ZSCAN29 Felis catus ENSFCAG00000002712 I
ZSCAN29 Gorilla gorilla ENSGGOG00000002879 I
ZKSCAN2 Gorilla gorilla ENSGGOG00000004769 I
ZSCAN29 Homo sapiens ENSG00000140265 D
ZKSCAN2 Homo sapiens ENSG00000155592 D
ENSSTOG00000006892 Ictidomys tridecemlineatus ENSSTOG00000006892 I
ENSSTOG00000000417 Ictidomys tridecemlineatus ENSSTOG00000000417 I
ZSCAN29 Loxodonta africana ENSLAFG00000001195 I
ZKSCAN2 Loxodonta africana ENSLAFG00000007287 I
ENSP00000331626 Macaca fascicularis ENSP00000331626 I
ENSMICG00000001583 Microcebus murinus ENSMICG00000001583 I
ZSCAN29 Microcebus murinus ENSMICG00000010051 I
ZSCAN29 Monodelphis domestica ENSMODG00000017820 I
ZKSCAN2 Monodelphis domestica ENSMODG00000015452 I
ENSMPUG00000010249 Mustela putorius furo ENSMPUG00000010249 I
Zkscan2 Mus musculus ENSMUSG00000030757 I
ENSNLEG00000004938 Nomascus leucogenys ENSNLEG00000004938 I
ENSNLEG00000011727 Nomascus leucogenys ENSNLEG00000011727 I
ZSCAN29 Otolemur garnettii ENSOGAG00000000128 I
ENSOARG00000018575 Ovis aries ENSOARG00000018575 I
ZSCAN29 Pan troglodytes ENSPTRG00000006992 I
ZKSCAN2 Pan troglodytes ENSPTRG00000007906 I
ENSPANG00000007624 Papio anubis ENSPANG00000007624 I
ENSPANG00000018475 Papio anubis ENSPANG00000018475 I
ENSPPYG00000007207 Pongo abelii ENSPPYG00000007207 I
ENSPPYG00000006412 Pongo abelii ENSPPYG00000006412 I
Zkscan2 Rattus norvegicus ENSRNOG00000024245 I
ENSSHAG00000012821 Sarcophilus harrisii ENSSHAG00000012821 I
ENSSHAG00000013237 Sarcophilus harrisii ENSSHAG00000013237 I
ZKSCAN2 Sorex araneus ENSSARG00000003883 I
ZKSCAN2 Sus scrofa ENSSSCG00000007823 I
ENSSSCG00000007824 Sus scrofa ENSSSCG00000007824 I
ENSTSYG00000004828 Tarsius syrichta ENSTSYG00000004828 I
ENSTSYG00000009836 Tarsius syrichta ENSTSYG00000009836 I
ZKSCAN2 Tursiops truncatus ENSTTRG00000015263 I
ZSCAN29 Tursiops truncatus ENSTTRG00000016234 I