Cmyd_10006705 (Chelonia mydas)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00010 (HLH) IPR001092 Cmyd_10006705 T047062_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Tcf3
M00753_2.00 		Mus musculus
VCACCTGBN
NVCAGGTGB		 PBM
Weirauch et al.(2013)
pTH3866 		0.858 0.920
Tcf3
M01723_2.00 		Mus musculus
NNVCACSTGB
VCASGTGBNN		 PBM
Weirauch et al.(2014)
pTH4580 		0.858 0.920
Tcf3
M00118_2.00 		Mus musculus
VCAYCTGB
VCAGRTGB		 PBM
Badis et al.(2009)
Tcfe2a_3865 		0.858 0.920
Tcf12
M01740_2.00 		Mus musculus
NVCAYCTGB
VCAGRTGBN		 PBM
Weirauch et al.(2014)
pTH5071 		0.858 0.840
TCF12
M04137_2.00 		Homo sapiens
VCACSTGB
VCASGTGB		 SELEX
Yin et al.(2017)
TCF12_eDBD_HT-SELEX 		0.858 0.840
Tcf12
M08062_2.00 		Mus musculus
RRCAGCTGNNN
NNNCAGCTGYY		 ChIP-seq
Mathelier et al.(2014)
MA0521.1 		0.858 0.840
TCF12
M07805_2.00 		Homo sapiens
NVDSCAGSTGB
VCASCTGSHBN		 ChIP-seq
Gerstein et al.(2012)
GM12878_TCF12_HudsonAlpha 		0.858 0.840
TCF12
M07806_2.00 		Homo sapiens
VCASCTGB
VCAGSTGB		 ChIP-seq
Gerstein et al.(2012)
H1-hESC_TCF12_HudsonAlpha 		0.858 0.840
TCF12
M08731_2.00 		Homo sapiens
CMCASCTGSH
DSCAGSTGKG		 Misc
Kulakovskiy et al.(2013)
HTF4_HUMAN.H11MO.0.A 		0.858 0.840
Tcf12
M08762_2.00 		Mus musculus
VMCASCTGSH
DSCAGSTGKB		 Misc
Kulakovskiy et al.(2013)
HTF4_MOUSE.H11MO.0.A 		0.858 0.840
TCF12
M09458_2.00 		Homo sapiens
NNVCAGCTGB
VCAGCTGBNN		 Misc
Heinz et al.(2010)
GM12878-Tcf12_GSE32465 		0.858 0.840
TCF12
M09858_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$HEB_Q6 		0.858 0.840
TCF12
M09859_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$HTF4_Q2 		0.858 0.840
TCF12
M09860_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$TCF12_01 		0.858 0.840
TCF12
M09861_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$TCF12_03 		0.858 0.840
TCF12
M09862_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$TCF12_05 		0.858 0.840
TCF12
M04138_2.00 		Homo sapiens
NCAYCTGN
NCAGRTGN		 SELEX
Yin et al.(2017)
TCF12_eDBD_Methyl-HT-SELEX 		0.858 0.840
Tcf4
M01750_2.00 		Mus musculus
VCAGVTGBN
NVCABCTGB		 PBM
Weirauch et al.(2014)
pTH5101 		0.855 0.840
TCF4
M02807_2.00 		Homo sapiens
HRCACCTGBN
NVCAGGTGYD		 SELEX
Jolma et al.(2013)
TCF4_1 		0.855 0.840
TCF4
M02808_2.00 		Homo sapiens
NVCACCTBBN
NVVAGGTGBN		 SELEX
Jolma et al.(2013)
TCF4_2 		0.855 0.840
TCF4
M02728_2.00 		Homo sapiens
RCACCTG
CAGGTGY		 SELEX
Jolma et al.(2010)
TCF4_dimer 		0.855 0.840
TCF4
M04214_2.00 		Homo sapiens
VCACCTGB
VCAGGTGB		 SELEX
Yin et al.(2017)
TCF4_eDBD_HT-SELEX 		0.855 0.840
Tcf4
M08775_2.00 		Mus musculus
HRCACCTGB
VCAGGTGYD		 Misc
Kulakovskiy et al.(2013)
ITF2_MOUSE.H11MO.0.B 		0.855 0.840
TCF4
M09461_2.00 		Homo sapiens
ASWTCAAAGRVN
NBYCTTTGAWST		 Misc
Heinz et al.(2010)
Hct116-Tcf4_SRA012054 		0.855 0.840
TCF4
M04215_2.00 		Homo sapiens
VCACCTGN
NCAGGTGB		 SELEX
Yin et al.(2017)
TCF4_eDBD_Methyl-HT-SELEX 		0.855 0.840
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cmyd_10006705 bHLH 1 52

Links

Other bHLH family TFs
Other Chelonia mydas TFs

160 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AAEL013408 Aedes aegypti AAEL013408 I 0.000
ENSAMEG00000010672 Ailuropoda melanoleuca ENSAMEG00000010672 I 0.000
Alligator_sinensis_CCG021031.1 Alligator sinensis Alligator_sinensis_CCG021031.1 I 0.000
ENSAPLG00000011215 Anas platyrhynchos ENSAPLG00000011215 I 0.000
DEAF1 Anolis carolinensis ENSACAG00000015102 I 0.000
AALB004583 Anopheles albimanus AALB004583 I 0.000
AARA003510 Anopheles arabiensis AARA003510 I 0.000
AATE015987 Anopheles atroparvus AATE015987 I 0.000
ACHR007416 Anopheles christyi ACHR007416 I 0.000
ACOM036369 Anopheles coluzzii ACOM036369 I 0.000
ACUA011008 Anopheles culicifacies ACUA011008 I 0.000
ADAC006957 Anopheles darlingi ADAC006957 I 0.000
ADIR001685 Anopheles dirus ADIR001685 I 0.000
AEPI005273 Anopheles epiroticus AEPI005273 I 0.000
AFAF013455 Anopheles farauti AFAF013455 I 0.000
AFUN005053 Anopheles funestus AFUN005053 I 0.000
AGAP004905 Anopheles gambiae AGAP004905 I 0.000
AMAM018568 Anopheles maculatus AMAM018568 I 0.000
AMEC000569 Anopheles melas AMEC000569 I 0.000
AMEM010249 Anopheles merus AMEM010249 I 0.000
AMIN011402 Anopheles minimus AMIN011402 I 0.000
AQUA000322 Anopheles quadriannulatus AQUA000322 I 0.000
ASIS014192 Anopheles sinensis ASIS014192 I 0.000
ASTEI10643 Anopheles stephensi ASTEI10643 I 0.000
GB41654 Apis mellifera GB41654 I 0.000
Afo_R011879 Aptenodytes forsteri Afo_R011879 I 0.000
ENSAMXG00000016516 Astyanax mexicanus ENSAMXG00000016516 I 0.000
ACEP13992 Atta cephalotes ACEP13992 I 0.000
BGLB009094 Biomphalaria glabrata BGLB009094 I 0.000
BGIBMGA002019 Bombyx mori BGIBMGA002019 I 0.000
ENSP00000371846-D1 Bos grunniens ENSP00000371846-D1 I 0.000
fgenesh2_pg.scaffold_59000067 Branchiostoma floridae fgenesh2_pg.scaffold_59000067 I 0.000
fgenesh2_pg.scaffold_59000072 Branchiostoma floridae fgenesh2_pg.scaffold_59000072 I 0.000
Brh_R009745 Buceros rhinoceros Brh_R009745 I 0.000
DEAF1 Callithrix jacchus ENSCJAG00000011996 I 0.000
Aan_R010721 Calypte anna Aan_R010721 I 0.000
Cflo_07037--XP_395757.2_APIME Camponotus floridanus Cflo_07037--XP_395757.2_APIME I 0.000
DEAF1 Canis familiaris ENSCAFG00000006569 I 0.000
CapteG228571 Capitella teleta CapteG228571 I 0.000
DEAF1 Cavia porcellus ENSCPOG00000006073 I 0.000
Cmyd_10004045 Chelonia mydas Cmyd_10004045 I 0.000
ENSCSAG00000010763 Chlorocebus sabaeus ENSCSAG00000010763 I 0.000
CGI_10012910 Crassostrea gigas CGI_10012910 I 0.000
CpipJ_CPIJ007045 Culex pipiens CpipJ_CPIJ007045 I 0.000
CPIJ007045 Culex quinquefasciatus CPIJ007045 I 0.000
KGM_18605 Danaus plexippus KGM_18605 I 0.000
deaf1 Danio rerio ENSDARG00000088844 I 0.000
DEAF1 Dasypus novemcinctus ENSDNOG00000000274 I 0.000
YQE_06816 Dendroctonus ponderosae YQE_06816 I 0.000
Deaf1 Dipodomys ordii ENSDORG00000015737 I 0.000
DEAF1 Equus caballus ENSECAG00000010151 I 0.000
DEAF1 Felis catus ENSFCAG00000007591 I 0.000
ENSFALG00000010923 Ficedula albicollis ENSFALG00000010923 I 0.000
ENSGMOG00000000222 Gadus morhua ENSGMOG00000000222 I 0.000
ENSGALG00000005089 Gallus gallus ENSGALG00000005089 I 0.000
deaf1 Gasterosteus aculeatus ENSGACG00000008942 I 0.000
Gfo_R011899 Geospiza fortis Gfo_R011899 I 0.000
DEAF1 Gorilla gorilla ENSGGOG00000014020 I 0.000
HHAL006904-PA Halyomorpha halys HHAL006904-PA I 0.000
Hsal_03559--XP_395757.2_APIME Harpegnathos saltator Hsal_03559--XP_395757.2_APIME I 0.000
HMEL013517 Heliconius melpomene HMEL013517 I 0.000
DEAF1 Homo sapiens ENSG00000177030 I 0.000
ENSSTOG00000004165 Ictidomys tridecemlineatus ENSSTOG00000004165 I 0.000
ISCW003915 Ixodes scapularis ISCW003915 I 0.000
ENSLACG00000014207 Latimeria chalumnae ENSLACG00000014207 I 0.000
ENSLOCG00000002360 Lepisosteus oculatus ENSLOCG00000002360 I 0.000
LDEC013410 Leptinotarsa decemlineata LDEC013410 I 0.000
LotgiG168359 Lottia gigantea LotgiG168359 I 0.000
DEAF1 Loxodonta africana ENSLAFG00000023242 I 0.000
LLOJ006782 Lutzomyia longipalpis LLOJ006782 I 0.000
ENSP00000371846 Macaca fascicularis ENSP00000371846 I 0.000
DEAF1 Macaca mulatta ENSMMUG00000002660 I 0.000
ENSMEUG00000005016 Macropus eugenii ENSMEUG00000005016 I 0.000
DEAF1 Meleagris gallopavo ENSMGAG00000003765 I 0.000
MCINX013640 Melitaea cinxia MCINX013640 I 0.000
DEAF1 Microcebus murinus ENSMICG00000001602 I 0.000
ENSMPUG00000008992 Mustela putorius furo ENSMPUG00000008992 I 0.000
Deaf1 Mus musculus ENSMUSG00000058886 I 0.000
Myotis_brandtii_DEAF1_10008461 Myotis brandtii Myotis_brandtii_DEAF1_10008461 I 0.000
DEAF1 Myotis lucifugus ENSMLUG00000026576 I 0.000
NV18168 Nasonia vitripennis NV18168 I 0.000
ENSNLEG00000008479 Nomascus leucogenys ENSNLEG00000008479 I 0.000
ENSOPRG00000002240 Ochotona princeps ENSOPRG00000002240 I 0.000
Ocbimv22013386m.g Octopus bimaculoides Ocbimv22013386m.g I 0.000
ENSONIG00000003936 Oreochromis niloticus ENSONIG00000003936 I 0.000
deaf1 Oryzias latipes ENSORLG00000019407 I 0.000
DEAF1 Otolemur garnettii ENSOGAG00000006434 I 0.000
ENSOARG00000006285 Ovis aries ENSOARG00000006285 I 0.000
DEAF1 Pan troglodytes ENSPTRG00000003129 D 0.000
ENSPANG00000008597 Papio anubis ENSPANG00000008597 I 0.000
PHUM581340 Pediculus humanus PHUM581340 I 0.000
ENSPSIG00000016545 Pelodiscus sinensis ENSPSIG00000016545 I 0.000
ENSPMAG00000004264 Petromyzon marinus ENSPMAG00000004264 I 0.000
PPAI007052 Phlebotomus papatasi PPAI007052 I 0.000
ENSPFOG00000014257 Poecilia formosa ENSPFOG00000014257 I 0.000
Pvit_08245 Pogona vitticeps Pvit_08245 I 0.000
DEAF1 Pteropus vampyrus ENSPVAG00000006883 I 0.000
Deaf1 Rattus norvegicus ENSRNOG00000017960 I 0.000
Sakowv30032927m.g Saccoglossus kowalevskii Sakowv30032927m.g I 0.000
ENSSHAG00000002042 Sarcophilus harrisii ENSSHAG00000002042 I 0.000
SINV20880 Solenopsis invicta SINV20880 I 0.000
SMAR003119 Strigamia maritima SMAR003119 I 0.000
DEAF1 Sus scrofa ENSSSCG00000012850 I 0.000
DEAF1 Taeniopygia guttata ENSTGUG00000007185 I 0.000
deaf1 Takifugu rubripes ENSTRUG00000002931 I 0.000
deaf1 Tetraodon nigroviridis ENSTNIG00000016068 I 0.000
TC000085 Tribolium castaneum TC000085 I 0.000
ENSTBEG00000010230 Tupaia belangeri ENSTBEG00000010230 I 0.000
DEAF1 Tursiops truncatus ENSTTRG00000015418 I 0.000
deaf1 Xenopus tropicalis XB-GENE-1216227 I 0.000
ENSXMAG00000013352 Xiphophorus maculatus ENSXMAG00000013352 I 0.000
L798_01684 Zootermopsis nevadensis L798_01684 I 0.000