estExt_fgenesh2_pg.C_2000006 (Branchiostoma floridae)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00010 (HLH) IPR001092 estExt_fgenesh2_pg.C_2000006 T048384_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Fer3
M05993_2.00 		Drosophila melanogaster
GKVACAGVTG
CABCTGTBMC		 B1H
Zhu et al.(2011)
Fer3_da_SANGER_5_FBgn0037937 		0.870 0.846
FERD3L
M04140_2.00 		Homo sapiens
GYVACAGCTGKYRC
GYRMCAGCTGTBRC		 SELEX
Yin et al.(2017)
FERD3L_FL_HT-SELEX_1 		0.870 0.808
FERD3L
M04141_2.00 		Homo sapiens
GTRMCAKMTGKYRC
GYRMCAKMTGKYAC		 SELEX
Yin et al.(2017)
FERD3L_FL_HT-SELEX_2 		0.870 0.808
FERD3L
M04142_2.00 		Homo sapiens
GTVACAGCTGKYRC
GYRMCAGCTGTBAC		 SELEX
Yin et al.(2017)
FERD3L_FL_Methyl-HT-SELEX_1 		0.870 0.808
FERD3L
M04143_2.00 		Homo sapiens
GTRMCAKMTGKYRC
GYRMCAKMTGKYAC		 SELEX
Yin et al.(2017)
FERD3L_FL_Methyl-HT-SELEX_2 		0.870 0.808
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
estExt_fgenesh2_pg.C_2000006 bHLH 205 257

Links

Other bHLH family TFs
Other Branchiostoma floridae TFs

113 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ANCCAN_14716 Ancylostoma caninum ANCCAN_14716 N 0.000
ACOC_0000493901 Angiostrongylus costaricensis ACOC_0000493901 N 0.000
ASIM_0001085501 Anisakis simplex ASIM_0001085501 N 0.000
ALUE_0000347301 Ascaris lumbricoides ALUE_0000347301 N 0.000
ASU_10686 Ascaris suum ASU_10686 N 0.000
CBN22200 Caenorhabditis brenneri CBN22200 N 0.000
CBG08484 Caenorhabditis briggsae CBG08484 N 0.000
grh-1 Caenorhabditis elegans WBGene00001707 N 0.000
CRE28107 Caenorhabditis remanei CRE28107 N 0.000
DICVIV_02142 Dictyocaulus viviparus DICVIV_02142 N 0.000
DME_0000295201 Dracunculus medinensis DME_0000295201 N 0.000
HPLM_0001248301 Haemonchus placei HPLM_0001248301 N 0.000
NECAME_01451 Necator americanus NECAME_01451 N 0.000
NBR_0001111401 Nippostrongylus brasiliensis NBR_0001111401 I 0.000
TELCIR_08176 Teladorsagia circumcincta TELCIR_08176 N 0.000