Pavir.J34298 (Panicum virgatum)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00010 (HLH) IPR001092 Pavir.J34298 T050933_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.J34298.1.p bHLH 306 353
Pavir.J34298.2.p bHLH 233 280

Links

Other bHLH family TFs
Other Panicum virgatum TFs

95 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
F775_19744 Aegilops tauschii F775_19744 N 0.865
F775_18830 Aegilops tauschii F775_18830 N 0.865
F775_14190 Aegilops tauschii F775_14190 I 0.842
F775_11347 Aegilops tauschii F775_11347 I 0.842
F775_10624 Aegilops tauschii F775_10624 N 0.878
AMTR_s00129p00124210 Amborella trichopoda AMTR_s00129p00124210 I 0.843
AMTR_s00009p00242790 Amborella trichopoda AMTR_s00009p00242790 I 0.838
Aquca_020_00579 Aquilegia coerulea Aquca_020_00579 I 0.843
PK08539.1 Cannabis sativa PK08539.1 I 0.840
evm.TU.supercontig_82.59 Carica papaya evm.TU.supercontig_82.59 I 0.843
Ciclev10008008m.g Citrus clementina Ciclev10008008m.g I 0.843
orange1.1g010045m.g Citrus sinensis orange1.1g010045m.g I 0.843
Gorai.009G038500 Gossypium raimondii Gorai.009G038500 I 0.843
MLOC_38470 Hordeum vulgare MLOC_38470 N 0.878
LPERR08G11070 Leersia perrieri LPERR08G11070 N 0.863
LPERR06G05570 Leersia perrieri LPERR06G05570 I 0.843
LPERR04G17400 Leersia perrieri LPERR04G17400 I 0.902
LPERR04G17390 Leersia perrieri LPERR04G17390 N 0.865
LPERR04G17380 Leersia perrieri LPERR04G17380 N 0.865
cassava10497.m1 Manihot esculenta cassava10497.m1 I 0.843
GSMUA_Achr9G18080_001 Musa acuminata GSMUA_Achr9G18080_001 I 0.873
GSMUA_Achr5G20600_001 Musa acuminata GSMUA_Achr5G20600_001 N 0.851
GSMUA_Achr3G10120_001 Musa acuminata GSMUA_Achr3G10120_001 I 0.873
GSMUA_Achr11G21270_001 Musa acuminata GSMUA_Achr11G21270_001 I 0.851
OBART06G06000 Oryza barthii OBART06G06000 I 0.843
OBART04G21370 Oryza barthii OBART04G21370 N 0.878
OBART04G21320 Oryza barthii OBART04G21320 N 0.878
OBART01G20350 Oryza barthii OBART01G20350 N 0.878
OB04G28380 Oryza brachyantha OB04G28380 N 0.878
OB04G28350 Oryza brachyantha OB04G28350 N 0.878
OB01G30110 Oryza brachyantha OB01G30110 N 0.875
OB04G28390 Oryza brachyantha OB04G28390 N 0.878
ORGLA04G0183800 Oryza glaberrima ORGLA04G0183800 N 0.878
ORGLA04G0183900 Oryza glaberrima ORGLA04G0183900 N 0.875
ORGLA11G0077500 Oryza glaberrima ORGLA11G0077500 N 0.878
OGLUM01G23970 Oryza glumaepatula OGLUM01G23970 N 0.878
OGLUM04G21260 Oryza glumaepatula OGLUM04G21260 N 0.878
OGLUM04G21350 Oryza glumaepatula OGLUM04G21350 N 0.875
OGLUM06G06280 Oryza glumaepatula OGLUM06G06280 I 0.843
BGIOSGA014565 Oryza indica BGIOSGA014565 N 0.878
BGIOSGA014566 Oryza indica BGIOSGA014566 N 0.875
BGIOSGA014567 Oryza indica BGIOSGA014567 N 0.878
BGIOSGA015472 Oryza indica BGIOSGA015472 N 0.878
BGIOSGA003821 Oryza indica BGIOSGA003821 N 0.878
BGIOSGA003819 Oryza indica BGIOSGA003819 N 0.878
BGIOSGA021743 Oryza indica BGIOSGA021743 I 0.843
OLONG_016960 Oryza longistaminata OLONG_016960 N 0.875
OLONG_016958 Oryza longistaminata OLONG_016958 N 0.878
OLONG_013313 Oryza longistaminata OLONG_013313 I 0.843
OLONG_009946 Oryza longistaminata OLONG_009946 N 0.878
OMERI01G18770 Oryza meridionalis OMERI01G18770 N 0.878
OMERI06G07190 Oryza meridionalis OMERI06G07190 I 0.843
OMERI04G17820 Oryza meridionalis OMERI04G17820 N 0.878
OMERI04G17790 Oryza meridionalis OMERI04G17790 N 0.878
OMERI01G18860 Oryza meridionalis OMERI01G18860 N 0.856
ONIVA01G22920 Oryza nivara ONIVA01G22920 N 0.842
ONIVA06G06960 Oryza nivara ONIVA06G06960 I 0.843
ONIVA04G19860 Oryza nivara ONIVA04G19860 N 0.875
ONIVA04G19650 Oryza nivara ONIVA04G19650 N 0.878
ONIVA01G22980 Oryza nivara ONIVA01G22980 N 0.878
OPUNC04G19040 Oryza punctata OPUNC04G19040 N 0.878
OPUNC04G19030 Oryza punctata OPUNC04G19030 N 0.875
OPUNC06G05770 Oryza punctata OPUNC06G05770 I 0.843
ORUFI11G09150 Oryza rufipogon ORUFI11G09150 N 0.878
ORUFI06G06220 Oryza rufipogon ORUFI06G06220 I 0.843
ORUFI04G22910 Oryza rufipogon ORUFI04G22910 N 0.875
ORUFI04G22890 Oryza rufipogon ORUFI04G22890 N 0.878
ORUFI01G23050 Oryza rufipogon ORUFI01G23050 N 0.878
OS04G0557200 Oryza sativa OS04G0557200 N 0.878
OS04G0557800 Oryza sativa OS04G0557800 N 0.865
OS06G0193400 Oryza sativa OS06G0193400 I 0.843
Pavir.Gb01093 Panicum virgatum Pavir.Gb01093 N 0.893
Pavir.Cb00833 Panicum virgatum Pavir.Cb00833 N 0.875
PDK_20s1464821g001 Phoenix dactylifera PDK_20s1464821g001 I 0.877
POPTR_0006s13790 Populus trichocarpa POPTR_0006s13790 I 0.855
29739.m003684 Ricinus communis 29739.m003684 I 0.855
SapurV1A.0249s0140 Salix purpurea SapurV1A.0249s0140 I 0.855
SELMODRAFT_425336 Selaginella moellendorffii SELMODRAFT_425336 I 0.843
Si000845m.g Setaria italica Si000845m.g I 0.902
Si012401m.g Setaria italica Si012401m.g I 0.902
Sb06g025060 Sorghum bicolor Sb06g025060 I 0.902
Sb06g025040 Sorghum bicolor Sb06g025040 I 0.902
Sb06g025020 Sorghum bicolor Sb06g025020 N 0.873
Sb06g016380 Sorghum bicolor Sb06g016380 N 0.844
TCM_037455 Theobroma cacao TCM_037455 I 0.843
TCM_037645 Theobroma cacao TCM_037645 I 0.851
Traes_2DL_099D4CA9B Triticum aestivum Traes_2DL_099D4CA9B N 0.846
Traes_2AL_4F71A8FB4 Triticum aestivum Traes_2AL_4F71A8FB4 N 0.878
TRIUR3_35186 Triticum urartu TRIUR3_35186 N 0.865
TRIUR3_26157 Triticum urartu TRIUR3_26157 N 0.878
TRIUR3_18279 Triticum urartu TRIUR3_18279 N 0.878
VIT_11s0016g00380 Vitis vinifera VIT_11s0016g00380 I 0.843
GRMZM5G822829 Zea mays GRMZM5G822829 N 0.899
GRMZM2G172795 Zea mays GRMZM2G172795 I 0.902