CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Scas_Contig673.33
(
Saccharomyces castellii
)
bHLH
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00010 (HLH)
IPR001092
Scas_Contig673.33
T051641_2.00
Misc (2018-Jan-19)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
CBF1
M00374_2.00
Saccharomyces cerevisiae
NCACGTGAY
RTCACGTGN
PBM
Berger et al.(2006)
Cbf1
0.839
0.755
CBF1
M01520_2.00
Saccharomyces cerevisiae
CACGTGAYH
DRTCACGTG
PBM
Zhu et al.(2009)
Cbf1
0.839
0.755
CBF1
M07440_2.00
Saccharomyces cerevisiae
TCACGTGH
DCACGTGA
PBM, CSA and or DIP-chip
Mathelier et al.(2014)
MA0281.1
0.839
0.755
CBF1
M08485_2.00
Saccharomyces cerevisiae
NCAYRTGN
NCAYRTGN
Misc
DeBoer et al.(2011)
YJR060W_1347
0.839
0.755
CBF1
M09483_2.00
Saccharomyces cerevisiae
KCACGTGAYN
NRTCACGTGM
Misc
Heinz et al.(2010)
Yeast-Cbf1_GSE29506
0.839
0.755
CBF1
M09897_2.00
Saccharomyces cerevisiae
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
F$CBF1_02
0.839
0.755
CBF1
M09898_2.00
Saccharomyces cerevisiae
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
F$CBF1_03
0.839
0.755
CBF1
M09899_2.00
Saccharomyces cerevisiae
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
F$CBF1_04
0.839
0.755
CBF1
M09900_2.00
Saccharomyces cerevisiae
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
F$CBF1_B
0.839
0.755
CBF1
M09901_2.00
Saccharomyces cerevisiae
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
F$CBF1_Q6
0.839
0.755
For this family, TFs with SR scores >
0.838
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Scas_Contig673.33
bHLH
196
244
RKESHKEVERRRRQNINTAIDTLAALLPMRESSKAAILMRSAEYIENLK
Links
Other
bHLH
family TFs
Other
Saccharomyces castellii
TFs
11 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
KAFR_0D03630
Kazachstania africana
KAFR_0D03630
I
0.860
KLLA0_B13761g
Kluyveromyces lactis
KLLA0_B13761g
N
0.839
SAKL0D12650g
Lachancea kluyveri
SAKL0D12650g
I
0.860
NCAS_0A12210
Naumovozyma castellii
NCAS_0A12210
I
0.914
13072_YJR060W
Saccharomyces bayanus
13072_YJR060W
I
0.860
CBF1
Saccharomyces cerevisiae
YJR060W
D
0.839
SKUD_191104
Saccharomyces kudriavzevii
SKUD_191104
I
0.860
12421_YJR060W
Saccharomyces mikatae
12421_YJR060W
I
0.860
12538_YJR060W
Saccharomyces paradoxus
12538_YJR060W
I
0.860
TBLA_0D03730
Tetrapisispora blattae
TBLA_0D03730
I
0.840
Kpol_1054p48
Vanderwaltozyma polyspora
Kpol_1054p48
I
0.840