Sjc_0011830 (Schistosoma japonicum)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00010 (HLH) IPR001092 Sjc_0011830 T051648_2.00 Misc (2018-Jan-19)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
nau
M03600_2.00 		Drosophila melanogaster
DBAACAGCTGTYVH
DBRACAGCTGTTVH		 SELEX
Nitta et al.(2015)
nau_1 		0.901 0.885
nau
M03601_2.00 		Drosophila melanogaster
NBRACAGCTGACRC
GYGTCAGCTGTYVN		 SELEX
Nitta et al.(2015)
nau_2 		0.901 0.885
nau
M03602_2.00 		Drosophila melanogaster
RCGWCAGCTGWCGC
GCGWCAGCTGWCGY		 SELEX
Nitta et al.(2015)
nau_3 		0.901 0.885
nau
M05949_2.00 		Drosophila melanogaster
CACCTGYY
RRCAGGTG		 B1H
Zhu et al.(2011)
nau_da_SANGER_5_FBgn0002922 		0.901 0.885
nau
M05950_2.00 		Drosophila melanogaster
RACASCTGACGC
GCGTCAGSTGTY		 B1H
Zhu et al.(2011)
nau_SANGER_5_FBgn0002922 		0.901 0.885
MYOD1
M04116_2.00 		Homo sapiens
BAACASSTGNYV
BRNCASSTGTTV		 SELEX
Yin et al.(2017)
MYOD1_eDBD_HT-SELEX_1 		0.853 0.846
MYOD1
M04117_2.00 		Homo sapiens
BRVCASMTGDCG
CGHCAKSTGBYV		 SELEX
Yin et al.(2017)
MYOD1_eDBD_HT-SELEX_2 		0.853 0.846
MYOD1
M04120_2.00 		Homo sapiens
NAACASSTGNYV
BRNCASSTGTTN		 SELEX
Yin et al.(2017)
MYOD1_FL_HT-SELEX_1 		0.853 0.846
MYOD1
M04121_2.00 		Homo sapiens
BRMCASCTGDCR
YGHCAGSTGKYV		 SELEX
Yin et al.(2017)
MYOD1_FL_HT-SELEX_2 		0.853 0.846
Myod1
M08060_2.00 		Mus musculus
NVNRRCAGSTGBN
NVCASCTGYYNBN		 ChIP-seq
Mathelier et al.(2014)
MA0499.1 		0.853 0.846
MYOD1
M08724_2.00 		Homo sapiens
NVNNRNRRCAGCTGN
NCAGCTGYYNYNNBN		 Misc
Kulakovskiy et al.(2013)
MYOD1_HUMAN.H11MO.0.A 		0.853 0.846
Myod1
M08745_2.00 		Mus musculus
NVNRRNRRCAGSTGB
VCASCTGYYNYYNBN		 Misc
Kulakovskiy et al.(2013)
MYOD1_MOUSE.H11MO.0.A 		0.853 0.846
MYOD1
M09838_2.00 		Homo sapiens
HRVCACCTGHBB
VVDCAGGTGBYD		 Transfac
Matys et al.(2006)
V$MYOD_01 		0.853 0.846
MYOD1
M09839_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$MYOD_Q6_02 		0.853 0.846
MYOD1
M09840_2.00 		Homo sapiens
NVCABCTGNY
RNCAGVTGBN		 Transfac
Matys et al.(2006)
V$MYOD_Q6 		0.853 0.846
MYOD1
M04118_2.00 		Homo sapiens
BAACANVTGTYV
BRACABNTGTTV		 SELEX
Yin et al.(2017)
MYOD1_eDBD_Methyl-HT-SELEX_1 		0.853 0.846
MYOD1
M04119_2.00 		Homo sapiens
BRRCASSTGDCR
YGHCASSTGYYV		 SELEX
Yin et al.(2017)
MYOD1_eDBD_Methyl-HT-SELEX_2 		0.853 0.846
MYOD1
M04122_2.00 		Homo sapiens
NAMCASSTGBYV
BRVCASSTGKTN		 SELEX
Yin et al.(2017)
MYOD1_FL_Methyl-HT-SELEX_1 		0.853 0.846
MYOD1
M04123_2.00 		Homo sapiens
BRMCASVTGNCR
YGNCABSTGKYV		 SELEX
Yin et al.(2017)
MYOD1_FL_Methyl-HT-SELEX_2 		0.853 0.846
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
CPRT0000001101 bHLH 801 852

Links

Other bHLH family TFs
Other Schistosoma japonicum TFs

113 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Aquca_037_00095 Aquilegia coerulea Aquca_037_00095 N
Aquca_013_00134 Aquilegia coerulea Aquca_013_00134 N
CPC Arabidopsis lyrata Al_scaffold_0005_3105 N
ETC3 Arabidopsis lyrata fgenesh1_pm.C_scaffold_6002892 N
TRY Arabidopsis lyrata fgenesh1_pg.C_scaffold_8001350 N
CPC Arabidopsis thaliana AT2G46410 N
ETC3 Arabidopsis thaliana AT4G01060 N
TRY Arabidopsis thaliana AT5G53200 N
Bostr.7365s0058 Boechera stricta Bostr.7365s0058 N
Bostr.26833s0960 Boechera stricta Bostr.26833s0960 N
Bostr.25993s0128 Boechera stricta Bostr.25993s0128 N
Bostr.13158s0169 Boechera stricta Bostr.13158s0169 N
Bo3g039260 Brassica oleracea Bo3g039260 N
Bo2g046050 Brassica oleracea Bo2g046050 N
Bo2g098940 Brassica oleracea Bo2g098940 N
Bo3g022870 Brassica oleracea Bo3g022870 N
Bo4g009260 Brassica oleracea Bo4g009260 N
Bo4g197120 Brassica oleracea Bo4g197120 N
Bo9g110930 Brassica oleracea Bo9g110930 N
Bra022637 Brassica rapa Bra022637 N
Bra039283 Brassica rapa Bra039283 N
Bra004539 Brassica rapa Bra004539 N
Bra008539 Brassica rapa Bra008539 N
Cagra.0050s0058 Capsella grandiflora Cagra.0050s0058 N
Cagra.1372s0017 Capsella grandiflora Cagra.1372s0017 N
Cagra.0483s0079 Capsella grandiflora Cagra.0483s0079 N
Cagra.0084s0067 Capsella grandiflora Cagra.0084s0067 N
Carubv10027412m.g Capsella rubella Carubv10027412m.g N
Carubv10024406m.g Capsella rubella Carubv10024406m.g N
Carubv10018233m.g Capsella rubella Carubv10018233m.g N
Carubv10003403m.g Capsella rubella Carubv10003403m.g N
evm.TU.supercontig_3.55 Carica papaya evm.TU.supercontig_3.55 N
Ca_15029 Cicer arietinum Ca_15029 N
Cla011563 Citrullus lanatus Cla011563 N
Ciclev10006315m.g Citrus clementina Ciclev10006315m.g N
Ciclev10024111m.g Citrus clementina Ciclev10024111m.g N
orange1.1g034546m.g Citrus sinensis orange1.1g034546m.g N
Cucsa.201970 Cucumis sativus Cucsa.201970 N
Eucgr.D02360 Eucalyptus grandis Eucgr.D02360 N
Eucgr.E00069 Eucalyptus grandis Eucgr.E00069 N
Eucgr.E00851 Eucalyptus grandis Eucgr.E00851 N
Thhalv10001695m.g Eutrema salsugineum Thhalv10001695m.g N
Thhalv10015741m.g Eutrema salsugineum Thhalv10015741m.g N
Thhalv10029104m.g Eutrema salsugineum Thhalv10029104m.g N
gene19217-v1.0-hybrid Fragaria vesca gene19217-v1.0-hybrid N
GLYMA01G43435 Glycine max GLYMA01G43435 N
GLYMA11G02061 Glycine max GLYMA11G02061 N
Gorai.007G107400 Gossypium raimondii Gorai.007G107400 N
Gorai.001G155700 Gossypium raimondii Gorai.001G155700 N
Lus10005949.g Linum usitatissimum Lus10005949.g N
MDP0000583070 Malus domestica MDP0000583070 N
MDP0000141474 Malus domestica MDP0000141474 N
cassava32987.m1 Manihot esculenta cassava32987.m1 N
cassava46504.m1 Manihot esculenta cassava46504.m1 N
cassava10382.m1 Manihot esculenta cassava10382.m1 N
MTR_2g088730 Medicago truncatula MTR_2g088730 N
MTR_5g009460 Medicago truncatula MTR_5g009460 N
GSMUA_AchrUn_randomG19730_001 Musa acuminata GSMUA_AchrUn_randomG19730_001 N
GSMUA_Achr3G25090_001 Musa acuminata GSMUA_Achr3G25090_001 N
GSMUA_Achr8G19880_001 Musa acuminata GSMUA_Achr8G19880_001 N
POPTR_0014s09200 Populus trichocarpa POPTR_0014s09200 N
POPTR_0012s01420 Populus trichocarpa POPTR_0012s01420 N
POPTR_0002s17030 Populus trichocarpa POPTR_0002s17030 N
POPTR_0015s02310 Populus trichocarpa POPTR_0015s02310 N
Pm018400 Prunus mume Pm018400 N
PRUPE_ppa023853mg Prunus persica PRUPE_ppa023853mg N
29742.m001447 Ricinus communis 29742.m001447 N
SapurV1A.2893s0010 Salix purpurea SapurV1A.2893s0010 N
SapurV1A.2295s0020 Salix purpurea SapurV1A.2295s0020 N
SapurV1A.0190s0070 Salix purpurea SapurV1A.0190s0070 N
SapurV1A.0013s0580 Salix purpurea SapurV1A.0013s0580 N
Solyc01g095640.1 Solanum lycopersicum Solyc01g095640.1 N
PGSC0003DMG400000212 Solanum tuberosum PGSC0003DMG400000212 N
TCM_016428 Theobroma cacao TCM_016428 N
TCM_005177 Theobroma cacao TCM_005177 N
VIT_16s0050g02530 Vitis vinifera VIT_16s0050g02530 N
VIT_15s0046g01130 Vitis vinifera VIT_15s0046g01130 N
VIT_10s0116g01760 Vitis vinifera VIT_10s0116g01760 N