Bo2g025350 (Brassica oleracea)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 Bo2g025350 T081710_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ZAT7
M01855_2.00 		Arabidopsis thaliana
NVDBRCACTNNNN
NNNNAGTGYVHBN		 PBM
Weirauch et al.(2014)
pTH7540 		0.794 0.913
AT3G46070
M06813_2.00 		Arabidopsis thaliana
HYHHYHTCACTYHHH
DDDRAGTGADRDDRD		 Dap-seq
OMalley et al.(2016)
AT3G46070_col_a 		0.777 0.848
AT3G53600
M01856_2.00 		Arabidopsis thaliana
NNHASWN
NWSTDNN		 PBM
Weirauch et al.(2014)
pTH7188 		0.771 0.739
AT3G53600
M00858_2.00 		Arabidopsis thaliana
NNNNRSWN
NWSYNNNN		 PBM
Franco-Zorrilla et al.(2014)
ZAT18 		0.771 0.739
AT5G03510
M00860_2.00 		Arabidopsis thaliana
NNHRSWN
NWSYDNN		 PBM
Franco-Zorrilla et al.(2014)
ZAT14 		0.762 0.761
AT5G04390
M01857_2.00 		Arabidopsis thaliana
NNHRSWN
NWSYDNN		 PBM
Weirauch et al.(2014)
pTH7158 		0.761 0.739
AT5G04390
M06819_2.00 		Arabidopsis thaliana
HHHHWHCACTN
NAGTGDWDDDD		 Dap-seq
OMalley et al.(2016)
At5g04390_col200_a 		0.761 0.739
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bo2g025350.1 C2H2 ZF 35 57
Bo2g025350.1 C2H2 ZF 78 100

Links

Other C2H2 ZF family TFs
Other Brassica oleracea TFs

249 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
F775_52535 Aegilops tauschii F775_52535 I 0.761
Aquca_010_00703 Aquilegia coerulea Aquca_010_00703 I 0.756
Aquca_010_00704 Aquilegia coerulea Aquca_010_00704 I 0.761
Aquca_027_00274 Aquilegia coerulea Aquca_027_00274 I 0.761
fgenesh2_kg.4__1796__AT2G37430.1 Arabidopsis lyrata fgenesh2_kg.4__1796__AT2G37430.1 I 0.761
fgenesh2_kg.5__1736__AT3G53600.1 Arabidopsis lyrata fgenesh2_kg.5__1736__AT3G53600.1 I 0.771
fgenesh2_kg.5__981__AT3G46090.1 Arabidopsis lyrata fgenesh2_kg.5__981__AT3G46090.1 I 0.794
scaffold_401325.1 Arabidopsis lyrata scaffold_401325.1 I 0.777
scaffold_501490.1 Arabidopsis lyrata scaffold_501490.1 I 0.776
AT2G28710 Arabidopsis thaliana AT2G28710 I 0.777
ZAT11 Arabidopsis thaliana AT2G37430 I 0.762
AT3G46070 Arabidopsis thaliana AT3G46070 D 0.777
ZAT8 Arabidopsis thaliana AT3G46080 I 0.794
ZAT7 Arabidopsis thaliana AT3G46090 D 0.794
AT3G53600 Arabidopsis thaliana AT3G53600 D 0.771
AT5G03510 Arabidopsis thaliana AT5G03510 D 0.762
AT5G04390 Arabidopsis thaliana AT5G04390 D 0.761
Bostr.11793s0034 Boechera stricta Bostr.11793s0034 I 0.771
Bostr.18473s0333 Boechera stricta Bostr.18473s0333 I 0.770
Bostr.23794s0343 Boechera stricta Bostr.23794s0343 I 0.761
Bostr.26833s0254 Boechera stricta Bostr.26833s0254 I 0.818
Bostr.27991s0045 Boechera stricta Bostr.27991s0045 I 0.777
Bo00576s170 Brassica oleracea Bo00576s170 I 0.771
Bo1g067420 Brassica oleracea Bo1g067420 I 0.778
Bo3g017740 Brassica oleracea Bo3g017740 I 0.818
Bo4g030570 Brassica oleracea Bo4g030570 I 0.762
Bo4g069230 Brassica oleracea Bo4g069230 I 0.777
Bo4g104940 Brassica oleracea Bo4g104940 I 0.756
Bo4g166690 Brassica oleracea Bo4g166690 I 0.777
Bo4g186920 Brassica oleracea Bo4g186920 I 0.762
Bo6g067580 Brassica oleracea Bo6g067580 I 0.765
Bo6g077190 Brassica oleracea Bo6g077190 I 0.756
Bo8g095300 Brassica oleracea Bo8g095300 I 0.756
Bo9g140820 Brassica oleracea Bo9g140820 I 0.818
Bra003148 Brassica rapa Bra003148 I 0.771
Bra003422 Brassica rapa Bra003422 I 0.756
Bra005197 Brassica rapa Bra005197 I 0.762
Bra006691 Brassica rapa Bra006691 I 0.818
Bra006692 Brassica rapa Bra006692 I 0.818
Bra007545 Brassica rapa Bra007545 I 0.756
Bra011931 Brassica rapa Bra011931 I 0.777
Bra014483 Brassica rapa Bra014483 I 0.756
Bra017188 Brassica rapa Bra017188 I 0.762
Bra019477 Brassica rapa Bra019477 I 0.778
Bra020284 Brassica rapa Bra020284 I 0.827
Bra035678 Brassica rapa Bra035678 I 0.777
Bra039806 Brassica rapa Bra039806 I 0.761
PK27255.1 Cannabis sativa PK27255.1 I 0.785
Cagra.0612s0086 Capsella grandiflora Cagra.0612s0086 I 0.771
Cagra.0666s0001 Capsella grandiflora Cagra.0666s0001 I 0.762
Cagra.1317s0034 Capsella grandiflora Cagra.1317s0034 I 0.818
Cagra.7309s0001 Capsella grandiflora Cagra.7309s0001 I 0.794
Cagra.7309s0002 Capsella grandiflora Cagra.7309s0002 I 0.778
Cagra.8274s0001 Capsella grandiflora Cagra.8274s0001 I 0.777
Carubv10018114m.g Capsella rubella Carubv10018114m.g I 0.771
Carubv10018142m.g Capsella rubella Carubv10018142m.g I 0.794
Carubv10018774m.g Capsella rubella Carubv10018774m.g I 0.778
Carubv10024141m.g Capsella rubella Carubv10024141m.g I 0.762
Carubv10024179m.g Capsella rubella Carubv10024179m.g I 0.777
evm.TU.contig_30912.1 Carica papaya evm.TU.contig_30912.1 I 0.761
evm.TU.supercontig_163.32 Carica papaya evm.TU.supercontig_163.32 I 0.761
evm.TU.supercontig_190.30 Carica papaya evm.TU.supercontig_190.30 I 0.785
Ca_07663 Cicer arietinum Ca_07663 I 0.756
Cla004091 Citrullus lanatus Cla004091 I 0.761
Cla008415 Citrullus lanatus Cla008415 I 0.766
Cla013490 Citrullus lanatus Cla013490 I 0.762
Ciclev10013311m.g Citrus clementina Ciclev10013311m.g I 0.763
Ciclev10029464m.g Citrus clementina Ciclev10029464m.g I 0.762
orange1.1g031430m.g Citrus sinensis orange1.1g031430m.g I 0.762
orange1.1g031966m.g Citrus sinensis orange1.1g031966m.g I 0.763
Cucsa.165460 Cucumis sativus Cucsa.165460 I 0.761
Cucsa.213470 Cucumis sativus Cucsa.213470 I 0.766
Cucsa.379890 Cucumis sativus Cucsa.379890 I 0.762
Eucgr.A01230 Eucalyptus grandis Eucgr.A01230 I 0.765
Eucgr.A01232 Eucalyptus grandis Eucgr.A01232 I 0.761
Eucgr.A01233 Eucalyptus grandis Eucgr.A01233 I 0.761
Eucgr.B02390 Eucalyptus grandis Eucgr.B02390 I 0.763
Eucgr.B02391 Eucalyptus grandis Eucgr.B02391 I 0.772
Eucgr.B02392 Eucalyptus grandis Eucgr.B02392 I 0.772
Eucgr.B02394 Eucalyptus grandis Eucgr.B02394 I 0.785
Eucgr.B02395 Eucalyptus grandis Eucgr.B02395 I 0.761
Eucgr.B02396 Eucalyptus grandis Eucgr.B02396 I 0.790
Eucgr.B02397 Eucalyptus grandis Eucgr.B02397 I 0.761
Eucgr.B02399 Eucalyptus grandis Eucgr.B02399 I 0.761
Eucgr.G02910 Eucalyptus grandis Eucgr.G02910 I 0.761
Eucgr.L02150 Eucalyptus grandis Eucgr.L02150 I 0.766
Thhalv10002839m.g Eutrema salsugineum Thhalv10002839m.g I 0.779
Thhalv10006508m.g Eutrema salsugineum Thhalv10006508m.g I 0.756
Thhalv10010956m.g Eutrema salsugineum Thhalv10010956m.g I 0.765
Thhalv10014884m.g Eutrema salsugineum Thhalv10014884m.g I 0.818
Thhalv10017303m.g Eutrema salsugineum Thhalv10017303m.g I 0.761
Thhalv10017375m.g Eutrema salsugineum Thhalv10017375m.g I 0.777
gene13959-v1.0-hybrid Fragaria vesca gene13959-v1.0-hybrid I 0.761
gene13960-v1.0-hybrid Fragaria vesca gene13960-v1.0-hybrid I 0.766
gene13962-v1.0-hybrid Fragaria vesca gene13962-v1.0-hybrid I 0.767
gene18204-v1.0-hybrid Fragaria vesca gene18204-v1.0-hybrid I 0.761
gene18205-v1.0-hybrid Fragaria vesca gene18205-v1.0-hybrid I 0.761
gene26659-v1.0-hybrid Fragaria vesca gene26659-v1.0-hybrid I 0.761
gene28452-v1.0-hybrid Fragaria vesca gene28452-v1.0-hybrid I 0.767
GLYMA02G10490 Glycine max GLYMA02G10490 I 0.761
GLYMA03G33050 Glycine max GLYMA03G33050 I 0.761
GLYMA03G33060 Glycine max GLYMA03G33060 I 0.771
GLYMA03G33070 Glycine max GLYMA03G33070 I 0.771
GLYMA10G05180 Glycine max GLYMA10G05180 I 0.756
GLYMA10G05190 Glycine max GLYMA10G05190 I 0.761
GLYMA10G05210 Glycine max GLYMA10G05210 I 0.771
GLYMA10G43630 Glycine max GLYMA10G43630 I 0.761
GLYMA11G15140 Glycine max GLYMA11G15140 I 0.776
GLYMA13G19550 Glycine max GLYMA13G19550 I 0.756
GLYMA13G19570 Glycine max GLYMA13G19570 I 0.771
GLYMA13G40860 Glycine max GLYMA13G40860 I 0.800
GLYMA15G04570 Glycine max GLYMA15G04570 I 0.800
GLYMA18G52410 Glycine max GLYMA18G52410 I 0.761
GLYMA19G35740 Glycine max GLYMA19G35740 I 0.761
GLYMA19G35770 Glycine max GLYMA19G35770 I 0.771
GLYMA20G23180 Glycine max GLYMA20G23180 I 0.761
Gorai.003G136200 Gossypium raimondii Gorai.003G136200 I 0.762
Gorai.006G104800 Gossypium raimondii Gorai.006G104800 I 0.761
Gorai.006G176000 Gossypium raimondii Gorai.006G176000 I 0.763
Gorai.006G176100 Gossypium raimondii Gorai.006G176100 I 0.761
Gorai.010G202400 Gossypium raimondii Gorai.010G202400 I 0.761
Gorai.011G254200 Gossypium raimondii Gorai.011G254200 I 0.761
Gorai.011G254300 Gossypium raimondii Gorai.011G254300 I 0.761
Gorai.012G006900 Gossypium raimondii Gorai.012G006900 I 0.761
Gorai.013G023300 Gossypium raimondii Gorai.013G023300 I 0.761
Gorai.013G265200 Gossypium raimondii Gorai.013G265200 I 0.772
LPERR01G31460 Leersia perrieri LPERR01G31460 I 0.758
LPERR03G11200 Leersia perrieri LPERR03G11200 I 0.761
LPERR05G01000 Leersia perrieri LPERR05G01000 I 0.761
Lus10024428.g Linum usitatissimum Lus10024428.g I 0.762
Lus10030330.g Linum usitatissimum Lus10030330.g I 0.761
chr3.LjT39G24.10.nd Lotus japonicus chr3.LjT39G24.10.nd I 0.776
chr5.CM0180.20.nc Lotus japonicus chr5.CM0180.20.nc I 0.761
LjSGA_020980.2 Lotus japonicus LjSGA_020980.2 I 0.761
LjT09F05.130.nd Lotus japonicus LjT09F05.130.nd I 0.765
MDP0000137826 Malus domestica MDP0000137826 I 0.761
MDP0000170739 Malus domestica MDP0000170739 I 0.766
MDP0000224773 Malus domestica MDP0000224773 I 0.766
MDP0000237150 Malus domestica MDP0000237150 I 0.763
MDP0000257423 Malus domestica MDP0000257423 I 0.761
MDP0000595671 Malus domestica MDP0000595671 I 0.766
MDP0000606526 Malus domestica MDP0000606526 I 0.766
cassava15802.m1 Manihot esculenta cassava15802.m1 I 0.761
cassava16287.m1 Manihot esculenta cassava16287.m1 I 0.761
cassava35212.m1 Manihot esculenta cassava35212.m1 I 0.763
cassava42054.valid.m1 Manihot esculenta cassava42054.valid.m1 I 0.761
cassava8924.m1 Manihot esculenta cassava8924.m1 I 0.772
cassava9455.m1 Manihot esculenta cassava9455.m1 I 0.761
MTR_1g067640 Medicago truncatula MTR_1g067640 I 0.761
MTR_1g067650 Medicago truncatula MTR_1g067650 I 0.761
MTR_1g067660 Medicago truncatula MTR_1g067660 I 0.756
MTR_2g096540 Medicago truncatula MTR_2g096540 I 0.801
MTR_7g023560 Medicago truncatula MTR_7g023560 I 0.761
MTR_7g100100 Medicago truncatula MTR_7g100100 I 0.772
mgf023249m Mimulus guttatus mgf023249m I 0.761
GSMUA_Achr10G03700_001 Musa acuminata GSMUA_Achr10G03700_001 I 0.761
GSMUA_Achr10G13540_001 Musa acuminata GSMUA_Achr10G13540_001 I 0.761
GSMUA_Achr1G01260_001 Musa acuminata GSMUA_Achr1G01260_001 I 0.757
GSMUA_Achr1G06720_001 Musa acuminata GSMUA_Achr1G06720_001 I 0.776
GSMUA_Achr5G29140_001 Musa acuminata GSMUA_Achr5G29140_001 I 0.757
GSMUA_Achr6G15360_001 Musa acuminata GSMUA_Achr6G15360_001 I 0.761
GSMUA_Achr9G03210_001 Musa acuminata GSMUA_Achr9G03210_001 I 0.761
GSMUA_AchrUn_randomG07580_001 Musa acuminata GSMUA_AchrUn_randomG07580_001 I 0.762
OBART05G01050 Oryza barthii OBART05G01050 I 0.761
ORGLA01G0304300 Oryza glaberrima ORGLA01G0304300 I 0.758
ORGLA03G0122200 Oryza glaberrima ORGLA03G0122200 I 0.761
ORGLA05G0010800 Oryza glaberrima ORGLA05G0010800 I 0.761
OGLUM01G40470 Oryza glumaepatula OGLUM01G40470 I 0.758
OGLUM03G12700 Oryza glumaepatula OGLUM03G12700 I 0.761
OGLUM05G01060 Oryza glumaepatula OGLUM05G01060 I 0.761
BGIOSGA000523 Oryza indica BGIOSGA000523 I 0.758
BGIOSGA010987 Oryza indica BGIOSGA010987 I 0.761
BGIOSGA018935 Oryza indica BGIOSGA018935 I 0.761
OMERI01G33680 Oryza meridionalis OMERI01G33680 I 0.758
OMERI03G11850 Oryza meridionalis OMERI03G11850 I 0.761
OMERI05G01120 Oryza meridionalis OMERI05G01120 I 0.761
OMERI05G16850 Oryza meridionalis OMERI05G16850 I 0.763
ONIVA01G18540 Oryza nivara ONIVA01G18540 I 0.761
ONIVA01G41600 Oryza nivara ONIVA01G41600 I 0.758
ONIVA05G01090 Oryza nivara ONIVA05G01090 I 0.761
OPUNC03G12210 Oryza punctata OPUNC03G12210 I 0.759
OPUNC03G12220 Oryza punctata OPUNC03G12220 I 0.761
OPUNC05G00940 Oryza punctata OPUNC05G00940 I 0.761
OPUNC05G16930 Oryza punctata OPUNC05G16930 I 0.763
OPUNC05G16960 Oryza punctata OPUNC05G16960 I 0.763
ORUFI01G40000 Oryza rufipogon ORUFI01G40000 I 0.758
ORUFI03G13310 Oryza rufipogon ORUFI03G13310 I 0.761
ORUFI05G01070 Oryza rufipogon ORUFI05G01070 I 0.761
OS01G0838600 Oryza sativa OS01G0838600 I 0.758
OS03G0279700 Oryza sativa OS03G0279700 I 0.761
OS05G0114400 Oryza sativa OS05G0114400 I 0.761
Pavir.Ca00650 Panicum virgatum Pavir.Ca00650 I 0.761
Pavir.Ea03334 Panicum virgatum Pavir.Ea03334 I 0.758
Pavir.Ia00294 Panicum virgatum Pavir.Ia00294 I 0.756
Pavir.Ia03651 Panicum virgatum Pavir.Ia03651 I 0.761
Pavir.Ib01297 Panicum virgatum Pavir.Ib01297 I 0.761
Pavir.Ib04509 Panicum virgatum Pavir.Ib04509 I 0.756
Pavir.J32634 Panicum virgatum Pavir.J32634 I 0.758
POPTR_0001s24250 Populus trichocarpa POPTR_0001s24250 I 0.762
POPTR_0006s12340 Populus trichocarpa POPTR_0006s12340 I 0.761
POPTR_0008s05110 Populus trichocarpa POPTR_0008s05110 I 0.761
POPTR_0009s03280 Populus trichocarpa POPTR_0009s03280 I 0.762
POPTR_0010s21650 Populus trichocarpa POPTR_0010s21650 I 0.761
POPTR_1833s00200 Populus trichocarpa POPTR_1833s00200 I 0.762
Pm000815 Prunus mume Pm000815 I 0.785
Pm002762 Prunus mume Pm002762 I 0.763
Pm018761 Prunus mume Pm018761 I 0.761
PRUPE_ppa011762mg Prunus persica PRUPE_ppa011762mg I 0.761
PRUPE_ppa012242mg Prunus persica PRUPE_ppa012242mg I 0.779
PRUPE_ppa022066mg Prunus persica PRUPE_ppa022066mg I 0.763
28637.m000203 Ricinus communis 28637.m000203 I 0.763
29154.m000218 Ricinus communis 29154.m000218 I 0.761
29585.m000611 Ricinus communis 29585.m000611 I 0.761
SapurV1A.0008s0970 Salix purpurea SapurV1A.0008s0970 I 0.762
SapurV1A.0038s0750 Salix purpurea SapurV1A.0038s0750 I 0.761
SapurV1A.0040s0050 Salix purpurea SapurV1A.0040s0050 I 0.761
SapurV1A.0095s0590 Salix purpurea SapurV1A.0095s0590 I 0.761
SapurV1A.4260s0020 Salix purpurea SapurV1A.4260s0020 I 0.761
Si023353m.g Setaria italica Si023353m.g I 0.761
Si037660m.g Setaria italica Si037660m.g I 0.761
Solyc05g054650.1 Solanum lycopersicum Solyc05g054650.1 I 0.761
Solyc05g054660.1 Solanum lycopersicum Solyc05g054660.1 I 0.761
PGSC0003DMG400008327 Solanum tuberosum PGSC0003DMG400008327 I 0.756
PGSC0003DMG400015531 Solanum tuberosum PGSC0003DMG400015531 I 0.762
PGSC0003DMG400015532 Solanum tuberosum PGSC0003DMG400015532 I 0.762
PGSC0003DMG400015533 Solanum tuberosum PGSC0003DMG400015533 I 0.763
PGSC0003DMG400015534 Solanum tuberosum PGSC0003DMG400015534 I 0.763
PGSC0003DMG400015557 Solanum tuberosum PGSC0003DMG400015557 I 0.762
PGSC0003DMG400023518 Solanum tuberosum PGSC0003DMG400023518 I 0.761
PGSC0003DMG400023547 Solanum tuberosum PGSC0003DMG400023547 I 0.761
PGSC0003DMG400030311 Solanum tuberosum PGSC0003DMG400030311 I 0.765
PGSC0003DMG400039582 Solanum tuberosum PGSC0003DMG400039582 I 0.756
Sb09g001560 Sorghum bicolor Sb09g001560 I 0.761
Sb09g022660 Sorghum bicolor Sb09g022660 I 0.764
TCM_022001 Theobroma cacao TCM_022001 I 0.771
TCM_041899 Theobroma cacao TCM_041899 I 0.764
Traes_1AS_B282BFB83 Triticum aestivum Traes_1AS_B282BFB83 I 0.761
Traes_1BS_22E395F75 Triticum aestivum Traes_1BS_22E395F75 I 0.761
Traes_1DS_CE96E8BF0 Triticum aestivum Traes_1DS_CE96E8BF0 I 0.761
TRAES3BF117500110CFD_g Triticum aestivum TRAES3BF117500110CFD_g I 0.758
Traes_4AS_D4763E468 Triticum aestivum Traes_4AS_D4763E468 I 0.761
VIT_06s0004g04180 Vitis vinifera VIT_06s0004g04180 I 0.761
VIT_13s0019g00480 Vitis vinifera VIT_13s0019g00480 I 0.761
AC205250.3_FG004 Zea mays AC205250.3_FG004 I 0.758
AC206217.2_FG006 Zea mays AC206217.2_FG006 I 0.764
GRMZM2G048154 Zea mays GRMZM2G048154 I 0.761
GRMZM2G061897 Zea mays GRMZM2G061897 I 0.756
GRMZM2G112251 Zea mays GRMZM2G112251 I 0.761
GRMZM5G804618 Zea mays GRMZM5G804618 I 0.758