CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

Bra040971 *(Brassica rapa)* C2H2 ZF
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source	Animal TF db
PF00096 (zf-C2H2)	IPR007087	Bra040971	T081978_2.00	Ensembl (2018-Dec-8)	Link out
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
STOP1 M06801_2.00	Arabidopsis thaliana	CCTBCMCCAGDTRHHMCYY	RRGKDDYAHCTGGKGVAGG	Dap-seq OMalley et al.(2016) STOP1_col_a	0.803	1.000
STOP1 M06802_2.00	Arabidopsis thaliana	RCCTNCMCCRGWWRN	NYWWCYGGKGNAGGY	Dap-seq OMalley et al.(2016) STOP1_colamp_a	0.803	1.000
For this family, TFs with SR scores > 0.755* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
Bra040971.1-P	C2H2 ZF	263	285	FTCSRCHTKKFSVIADLKTHEKH
Bra040971.1-P	C2H2 ZF	286	315	CGQNKWLCSCGTTFSRKDKLFGHIALFQGH

Links
Other C2H2 ZF family TFs
Other *Brassica rapa* TFs