EFV52612 (Trichinella spiralis)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 EFV52612 T085717_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
SP8
M02898_2.00 		Homo sapiens
VMCACBCCCMCH
DGKGGGVGTGKB		 SELEX
Jolma et al.(2013)
SP8_1 		0.804 0.913
Sp1
M03682_2.00 		Drosophila melanogaster
HNGCCACGCCCARK
MYTGGGCGTGGCND		 SELEX
Nitta et al.(2015)
Sp1_1 		0.804 0.913
SP8
M04517_2.00 		Homo sapiens
NMCMCGCCCMYH
DRKGGGCGKGKN		 SELEX
Yin et al.(2017)
SP8_eDBD_HT-SELEX 		0.804 0.913
SP9
M04645_2.00 		Homo sapiens
VMCMCGCCCMYH
DRKGGGCGKGKB		 SELEX
Yin et al.(2017)
SP9_eDBD_HT-SELEX 		0.804 0.913
Sp1
M06117_2.00 		Drosophila melanogaster
DHYMCGCCCMY
RKGGGCGKRDH		 B1H
Zhu et al.(2011)
Sp1_SANGER_5_FBgn0020378 		0.804 0.913
Sp1
M06118_2.00 		Drosophila melanogaster
NKHHMCGCCCMYNN
NNRKGGGCGKDDMN		 B1H
Zhu et al.(2011)
Sp1_SOLEXA_2.5_FBgn0020378 		0.804 0.913
SP8
M04518_2.00 		Homo sapiens
RHCACGCCCMYH
DRKGGGCGTGDY		 SELEX
Yin et al.(2017)
SP8_eDBD_Methyl-HT-SELEX 		0.804 0.913
SP9
M04646_2.00 		Homo sapiens
RYCACGCCCMYH
DRKGGGCGTGRY		 SELEX
Yin et al.(2017)
SP9_eDBD_Methyl-HT-SELEX 		0.804 0.913
Sp5
M09016_2.00 		Mus musculus
CYCCKCCYHYHBCYYHBYYYHYHB
VDRDRRRVDRRGVDRDRGGMGGRG		 Misc
Kulakovskiy et al.(2013)
SP5_MOUSE.H11MO.0.C 		0.788 0.870
SP5
M10319_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SP5_Q2 		0.788 0.870
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
EFV52612 C2H2 ZF 233 257
EFV52612 C2H2 ZF 263 287
EFV52612 C2H2 ZF 293 315

Links

Other C2H2 ZF family TFs
Other Trichinella spiralis TFs

365 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
CapteG101804 Capitella teleta CapteG101804 N
ECANG7_00830 Echinococcus canadensis ECANG7_00830 N
EmuJ_000240200 Echinococcus multilocularis EmuJ_000240200 N
HelroG79060 Helobdella robusta HelroG79060 N
SCUD_0000093801 Schistosoma curassoni SCUD_0000093801 N
A_03156 Schistosoma haematobium A_03156 N
Smp_034860 Schistosoma mansoni Smp_034860 N
SMU15028438 Schmidtea mediterranea SMU15028438 N
TASK_0000695601 Taenia asiatica TASK_0000695601 N