ENSCING00000012018 (Ciona intestinalis)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 ENSCING00000012018 T089097_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
GLI3
M04416_2.00 		Homo sapiens
VGACCACCCACVNHG
CDNBGTGGGTGGTCB		 SELEX
Yin et al.(2017)
GLI3_eDBD_HT-SELEX 		0.798 0.904
GLI3
M02642_2.00 		Homo sapiens
GACCACCCANK
MNTGGGTGGTC		 SELEX
Hallikas et al.(2006)
GLI3 		0.798 0.904
GLI3
M08875_2.00 		Homo sapiens
VRACCACCCAV
BTGGGTGGTYB		 Misc
Kulakovskiy et al.(2013)
GLI3_HUMAN.H11MO.0.B 		0.798 0.904
GLI3
M10167_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$GLI3_01 		0.798 0.904
GLI3
M10168_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$GLI3_Q5_01 		0.798 0.904
GLI3
M04417_2.00 		Homo sapiens
CWHBGTGGGTGGTCY
RGACCACCCACVDWG		 SELEX
Yin et al.(2017)
GLI3_eDBD_Methyl-HT-SELEX 		0.798 0.904
Gli2
M01024_2.00 		Mus musculus
NGACCACCYN
NRGGTGGTCN		 PBM
Peterson et al.(2012)
Gli2 		0.793 0.886
GLI2
M02875_2.00 		Homo sapiens
GMCCACMCANVNHB
VDNBNTGKGTGGKC		 SELEX
Jolma et al.(2013)
GLI2_1 		0.793 0.886
GLI2
M02876_2.00 		Homo sapiens
GCGACCACVCWR
YWGBGTGGTCGC		 SELEX
Jolma et al.(2013)
GLI2_2 		0.793 0.886
GLI2
M02732_2.00 		Homo sapiens
GACCACMCAN
NTGKGTGGTC		 SELEX
Jolma et al.(2010)
GLI2_monomer 		0.793 0.886
GLI2
M04402_2.00 		Homo sapiens
VGACCACCCACVDHG
CDHBGTGGGTGGTCB		 SELEX
Yin et al.(2017)
GLI2_eDBD_HT-SELEX 		0.793 0.886
GLI2
M02641_2.00 		Homo sapiens
GACCACCCAHG
CDTGGGTGGTC		 SELEX
Hallikas et al.(2006)
GLI2 		0.793 0.886
GLI2
M10114_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$GLI2_Q3 		0.793 0.886
GLI2
M10115_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$GLI2_Q6 		0.793 0.886
GLI2
M04403_2.00 		Homo sapiens
RGACCACCCACVWWG
CWWBGTGGGTGGTCY		 SELEX
Yin et al.(2017)
GLI2_eDBD_Methyl-HT-SELEX 		0.793 0.886
Gli1
M01023_2.00 		Mus musculus
NGACCACCHN
NDGGTGGTCN		 PBM
Peterson et al.(2012)
Gli1 		0.775 0.868
GLI1
M02643_2.00 		Homo sapiens
GACCACCCAMG
CKTGGGTGGTC		 SELEX
Hallikas et al.(2006)
GLI1 		0.775 0.868
Gli1
M08976_2.00 		Mus musculus
RGRCCACCCASV
BSTGGGTGGYCY		 Misc
Kulakovskiy et al.(2013)
GLI1_MOUSE.H11MO.0.C 		0.775 0.868
GLI1
M10176_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$GLI1_Q2 		0.775 0.868
GLI1
M10177_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$GLI1_Q3_01 		0.775 0.868
GLI1
M10178_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$GLI1_Q3 		0.775 0.868
GLI1
M10179_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$GLI_Q6 		0.775 0.868
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSCINP00000022660 C2H2 ZF 563 587
ENSCINP00000022660 C2H2 ZF 595 622
ENSCINP00000022660 C2H2 ZF 628 652
ENSCINP00000022660 C2H2 ZF 658 683
ENSCINP00000022660 C2H2 ZF 689 714

Links

Other C2H2 ZF family TFs
Other Ciona intestinalis TFs

162 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSAMEG00000004878 Ailuropoda melanoleuca ENSAMEG00000004878 I 0.775
ENSAMEG00000008405 Ailuropoda melanoleuca ENSAMEG00000008405 I 0.798
ENSAMEG00000008708 Ailuropoda melanoleuca ENSAMEG00000008708 I 0.793
ENSAPLG00000004361 Anas platyrhynchos ENSAPLG00000004361 I 0.798
ENSAPLG00000005128 Anas platyrhynchos ENSAPLG00000005128 I 0.796
ENSAPLG00000015141 Anas platyrhynchos ENSAPLG00000015141 I 0.793
GLI2 Anolis carolinensis ENSACAG00000004133 I 0.793
GLI1 Anolis carolinensis ENSACAG00000006541 I 0.796
GLI3 Anolis carolinensis ENSACAG00000017547 I 0.798
Afo_R006826 Aptenodytes forsteri Afo_R006826 I 0.793
Afo_R007816 Aptenodytes forsteri Afo_R007816 I 0.798
ENSAMXG00000002477 Astyanax mexicanus ENSAMXG00000002477 I 0.800
ENSAMXG00000003125 Astyanax mexicanus ENSAMXG00000003125 I 0.793
ENSAMXG00000006646 Astyanax mexicanus ENSAMXG00000006646 I 0.793
ENSAMXG00000017236 Astyanax mexicanus ENSAMXG00000017236 I 0.796
ENSBTAP00000008704-D1 Bos grunniens ENSBTAP00000008704-D1 I 0.775
ENSP00000390436-D1 Bos grunniens ENSP00000390436-D1 I 0.793
GLI1 Bos taurus ENSBTAG00000006631 I 0.775
GLI3 Bos taurus ENSBTAG00000010671 I 0.798
GLI2 Bos taurus ENSBTAG00000011682 I 0.793
Brh_R008256 Buceros rhinoceros Brh_R008256 I 0.798
Brh_R010932 Buceros rhinoceros Brh_R010932 I 0.793
GLI1 Callithrix jacchus ENSCJAG00000007324 I 0.775
GLI3 Callithrix jacchus ENSCJAG00000007690 I 0.798
ENSCJAG00000013342 Callithrix jacchus ENSCJAG00000013342 I 0.793
Aan_R003640 Calypte anna Aan_R003640 I 0.793
Aan_R014715 Calypte anna Aan_R014715 I 0.798
GLI1 Canis familiaris ENSCAFG00000000223 I 0.775
GLI3 Canis familiaris ENSCAFG00000003535 I 0.798
GLI2 Canis familiaris ENSCAFG00000004821 I 0.793
GLI1 Cavia porcellus ENSCPOG00000005414 I 0.775
GLI2 Cavia porcellus ENSCPOG00000015189 I 0.793
Cmyd_10007839 Chelonia mydas Cmyd_10007839 I 0.798
Cmyd_10009086 Chelonia mydas Cmyd_10009086 I 0.793
ENSCSAG00000004897 Chlorocebus sabaeus ENSCSAG00000004897 I 0.775
ENSCSAG00000015361 Chlorocebus sabaeus ENSCSAG00000015361 I 0.798
ENSCSAG00000016668 Chlorocebus sabaeus ENSCSAG00000016668 I 0.793
GLI3 Choloepus hoffmanni ENSCHOG00000003774 I 0.798
ENSCSAVG00000009575 Ciona savignyi ENSCSAVG00000009575 I 0.825
gli2b Danio rerio ENSDARG00000020884 I 0.793
gli3 Danio rerio ENSDARG00000052131 I 0.798
gli1 Danio rerio ENSDARG00000101244 I 0.796
GLI2 Dasypus novemcinctus ENSDNOG00000008730 I 0.793
GLI1 Dasypus novemcinctus ENSDNOG00000017512 I 0.775
GLI3 Dasypus novemcinctus ENSDNOG00000049286 I 0.798
Gli1 Dipodomys ordii ENSDORG00000007124 I 0.775
GLI3 Echinops telfairi ENSETEG00000003955 I 0.782
GLI1 Echinops telfairi ENSETEG00000006674 I 0.775
ENSECAG00000008016 Equus caballus ENSECAG00000008016 I 0.783
GLI3 Equus caballus ENSECAG00000009281 I 0.798
GLI1 Equus caballus ENSECAG00000011246 I 0.775
GLI1 Felis catus ENSFCAG00000002081 I 0.775
GLI3 Felis catus ENSFCAG00000011989 I 0.798
GLI2 Felis catus ENSFCAG00000014531 I 0.793
ENSFALG00000005113 Ficedula albicollis ENSFALG00000005113 I 0.798
ENSFALG00000013217 Ficedula albicollis ENSFALG00000013217 I 0.793
GLI2 Gallus gallus ENSGALG00000011630 I 0.793
ENSGALG00000012329 Gallus gallus ENSGALG00000012329 I 0.798
ENSGALG00000014639 Gallus gallus ENSGALG00000014639 I 0.796
ENSGACG00000004834 Gasterosteus aculeatus ENSGACG00000004834 I 0.773
Gfo_R001212 Geospiza fortis Gfo_R001212 I 0.793
Gfo_R007869 Geospiza fortis Gfo_R007869 I 0.798
Gfo_R013682 Geospiza fortis Gfo_R013682 I 0.796
GLI1 Gorilla gorilla ENSGGOG00000001974 I 0.775
GLI3 Gorilla gorilla ENSGGOG00000002026 I 0.798
GLI2 Gorilla gorilla ENSGGOG00000009653 I 0.789
GLI2 Homo sapiens ENSG00000074047 D 0.793
GLI3 Homo sapiens ENSG00000106571 D 0.798
GLI1 Homo sapiens ENSG00000111087 D 0.775
ENSSTOG00000004582 Ictidomys tridecemlineatus ENSSTOG00000004582 I 0.793
ENSSTOG00000020366 Ictidomys tridecemlineatus ENSSTOG00000020366 I 0.775
ENSLACG00000017364 Latimeria chalumnae ENSLACG00000017364 I 0.798
ENSLOCG00000005938 Lepisosteus oculatus ENSLOCG00000005938 I 0.796
ENSLOCG00000011983 Lepisosteus oculatus ENSLOCG00000011983 I 0.798
GLI3 Loxodonta africana ENSLAFG00000008944 I 0.798
GLI1 Loxodonta africana ENSLAFG00000022910 I 0.775
ENSMMUP00000002494 Macaca fascicularis ENSMMUP00000002494 I 0.793
ENSP00000228682 Macaca fascicularis ENSP00000228682 I 0.775
ENSP00000379258 Macaca fascicularis ENSP00000379258 I 0.798
GLI2 Macaca mulatta ENSMMUG00000001868 I 0.793
GLI3 Macaca mulatta ENSMMUG00000013614 I 0.798
GLI1 Macaca mulatta ENSMMUG00000022058 I 0.775
ENSMEUG00000009702 Macropus eugenii ENSMEUG00000009702 I 0.775
ENSMEUG00000013134 Macropus eugenii ENSMEUG00000013134 I 0.798
ENSMGAG00000003540 Meleagris gallopavo ENSMGAG00000003540 I 0.796
GLI2 Meleagris gallopavo ENSMGAG00000011872 I 0.793
GLI3 Meleagris gallopavo ENSMGAG00000012277 I 0.798
GLI3 Microcebus murinus ENSMICG00000010785 I 0.782
GLI2 Monodelphis domestica ENSMODG00000000245 I 0.793
GLI3 Monodelphis domestica ENSMODG00000002714 I 0.798
ENSMPUG00000000986 Mustela putorius furo ENSMPUG00000000986 I 0.793
ENSMPUG00000001825 Mustela putorius furo ENSMPUG00000001825 I 0.775
ENSMPUG00000018143 Mustela putorius furo ENSMPUG00000018143 I 0.798
Gli1 Mus musculus ENSMUSG00000025407 D 0.775
Gli2 Mus musculus ENSMUSG00000048402 D 0.793
Myotis_brandtii_GLI1_10018379 Myotis brandtii Myotis_brandtii_GLI1_10018379 I 0.775
Myotis_brandtii_Gli2_10019076 Myotis brandtii Myotis_brandtii_Gli2_10019076 I 0.793
GLI1 Myotis lucifugus ENSMLUG00000001013 I 0.775
GLI3 Myotis lucifugus ENSMLUG00000015711 I 0.798
ENSNLEG00000000944 Nomascus leucogenys ENSNLEG00000000944 I 0.793
ENSNLEG00000003160 Nomascus leucogenys ENSNLEG00000003160 I 0.798
ENSNLEG00000017337 Nomascus leucogenys ENSNLEG00000017337 I 0.775
GLI1 Ochotona princeps ENSOPRG00000006483 I 0.775
GLI3 Ochotona princeps ENSOPRG00000011225 I 0.798
Ogr02489 Ophisaurus gracilis Ogr02489 I 0.793
ENSONIG00000006298 Oreochromis niloticus ENSONIG00000006298 I 0.773
GLI3 Ornithorhynchus anatinus ENSOANG00000010699 I 0.798
GLI2 Oryctolagus cuniculus ENSOCUG00000000638 I 0.793
GLI3 Oryctolagus cuniculus ENSOCUG00000006563 I 0.798
GLI1 Oryctolagus cuniculus ENSOCUG00000011128 I 0.775
gli2b Oryzias latipes ENSORLG00000012490 I 0.773
GLI1 Otolemur garnettii ENSOGAG00000005219 I 0.775
GLI3 Otolemur garnettii ENSOGAG00000012651 I 0.798
GLI2 Otolemur garnettii ENSOGAG00000032438 I 0.798
ENSOARG00000006674 Ovis aries ENSOARG00000006674 I 0.775
ENSOARG00000013052 Ovis aries ENSOARG00000013052 I 0.793
ENSOARG00000017420 Ovis aries ENSOARG00000017420 I 0.798
GLI1 Pan troglodytes ENSPTRG00000005133 I 0.775
GLI2 Pan troglodytes ENSPTRG00000012413 I 0.793
GLI3 Pan troglodytes ENSPTRG00000019117 I 0.798
ENSPANG00000014545 Papio anubis ENSPANG00000014545 I 0.798
ENSPANG00000017044 Papio anubis ENSPANG00000017044 I 0.775
ENSPANG00000024168 Papio anubis ENSPANG00000024168 I 0.793
ENSPSIG00000008752 Pelodiscus sinensis ENSPSIG00000008752 I 0.793
ENSPSIG00000017804 Pelodiscus sinensis ENSPSIG00000017804 I 0.798
ENSPFOG00000005116 Poecilia formosa ENSPFOG00000005116 I 0.793
ENSPFOG00000019294 Poecilia formosa ENSPFOG00000019294 I 0.773
Pvit_05813 Pogona vitticeps Pvit_05813 I 0.796
Pvit_06470 Pogona vitticeps Pvit_06470 I 0.793
Pvit_19093 Pogona vitticeps Pvit_19093 I 0.798
ENSPPYG00000004689 Pongo abelii ENSPPYG00000004689 I 0.775
ENSPPYG00000012778 Pongo abelii ENSPPYG00000012778 I 0.793
ENSPPYG00000017613 Pongo abelii ENSPPYG00000017613 I 0.798
GLI2 Procavia capensis ENSPCAG00000001704 I 0.793
GLI3 Procavia capensis ENSPCAG00000015092 I 0.798
GLI1 Procavia capensis ENSPCAG00000015756 I 0.771
GLI1 Pteropus vampyrus ENSPVAG00000012109 I 0.775
GLI3 Pteropus vampyrus ENSPVAG00000015920 I 0.798
Gli2 Rattus norvegicus ENSRNOG00000007261 I 0.793
Gli1 Rattus norvegicus ENSRNOG00000025120 I 0.775
ENSSHAG00000004233 Sarcophilus harrisii ENSSHAG00000004233 I 0.793
ENSSHAG00000006652 Sarcophilus harrisii ENSSHAG00000006652 I 0.775
ENSSHAG00000009727 Sarcophilus harrisii ENSSHAG00000009727 I 0.798
GLI2 Sus scrofa ENSSSCG00000015733 I 0.793
GLI2 Taeniopygia guttata ENSTGUG00000004599 I 0.793
gli2b Takifugu rubripes ENSTRUG00000007692 I 0.773
gli2b Takifugu rubripes ENSTRUG00000010444 I 0.793
ENSTSYG00000009406 Tarsius syrichta ENSTSYG00000009406 I 0.798
gli2b Tetraodon nigroviridis ENSTNIG00000010251 I 0.783
gli2b Tetraodon nigroviridis ENSTNIG00000013668 I 0.773
gli2b Tetraodon nigroviridis ENSTNIG00000017828 I 0.783
GLI3 Tupaia belangeri ENSTBEG00000006673 I 0.798
GLI2 Tursiops truncatus ENSTTRG00000002058 I 0.783
GLI3 Tursiops truncatus ENSTTRG00000003628 I 0.798
GLI1 Tursiops truncatus ENSTTRG00000013086 I 0.775
Tal_R006208 Tyto alba Tal_R006208 I 0.793
Tal_R009020 Tyto alba Tal_R009020 I 0.796
gli3.L Xenopus laevis XB-GENE-865509 I 0.798
XP_002933449 Xenopus tropicalis XP_002933449 I 0.798
XP_002933450 Xenopus tropicalis XP_002933450 I 0.798
ENSXMAG00000001777 Xiphophorus maculatus ENSXMAG00000001777 I 0.773
ENSXMAG00000006443 Xiphophorus maculatus ENSXMAG00000006443 I 0.793