gli3 (Danio rerio)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 ENSDARG00000052131 T090938_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
GLI3
M04416_2.00 		Homo sapiens
VGACCACCCACVNHG
CDNBGTGGGTGGTCB		 SELEX
Yin et al.(2017)
GLI3_eDBD_HT-SELEX 		0.825 0.974
GLI3
M02642_2.00 		Homo sapiens
GACCACCCANK
MNTGGGTGGTC		 SELEX
Hallikas et al.(2006)
GLI3 		0.825 0.974
GLI3
M08875_2.00 		Homo sapiens
VRACCACCCAV
BTGGGTGGTYB		 Misc
Kulakovskiy et al.(2013)
GLI3_HUMAN.H11MO.0.B 		0.825 0.974
GLI3
M10167_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$GLI3_01 		0.825 0.974
GLI3
M10168_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$GLI3_Q5_01 		0.825 0.974
GLI3
M04417_2.00 		Homo sapiens
CWHBGTGGGTGGTCY
RGACCACCCACVDWG		 SELEX
Yin et al.(2017)
GLI3_eDBD_Methyl-HT-SELEX 		0.825 0.974
Gli2
M01024_2.00 		Mus musculus
NGACCACCYN
NRGGTGGTCN		 PBM
Peterson et al.(2012)
Gli2 		0.807 0.939
GLI2
M02875_2.00 		Homo sapiens
GMCCACMCANVNHB
VDNBNTGKGTGGKC		 SELEX
Jolma et al.(2013)
GLI2_1 		0.807 0.939
GLI2
M02876_2.00 		Homo sapiens
GCGACCACVCWR
YWGBGTGGTCGC		 SELEX
Jolma et al.(2013)
GLI2_2 		0.807 0.939
GLI2
M02732_2.00 		Homo sapiens
GACCACMCAN
NTGKGTGGTC		 SELEX
Jolma et al.(2010)
GLI2_monomer 		0.807 0.939
GLI2
M04402_2.00 		Homo sapiens
VGACCACCCACVDHG
CDHBGTGGGTGGTCB		 SELEX
Yin et al.(2017)
GLI2_eDBD_HT-SELEX 		0.807 0.939
GLI2
M02641_2.00 		Homo sapiens
GACCACCCAHG
CDTGGGTGGTC		 SELEX
Hallikas et al.(2006)
GLI2 		0.807 0.939
GLI2
M10114_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$GLI2_Q3 		0.807 0.939
GLI2
M10115_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$GLI2_Q6 		0.807 0.939
GLI2
M04403_2.00 		Homo sapiens
RGACCACCCACVWWG
CWWBGTGGGTGGTCY		 SELEX
Yin et al.(2017)
GLI2_eDBD_Methyl-HT-SELEX 		0.807 0.939
Gli1
M01023_2.00 		Mus musculus
NGACCACCHN
NDGGTGGTCN		 PBM
Peterson et al.(2012)
Gli1 		0.796 0.878
GLI1
M02643_2.00 		Homo sapiens
GACCACCCAMG
CKTGGGTGGTC		 SELEX
Hallikas et al.(2006)
GLI1 		0.796 0.878
Gli1
M08976_2.00 		Mus musculus
RGRCCACCCASV
BSTGGGTGGYCY		 Misc
Kulakovskiy et al.(2013)
GLI1_MOUSE.H11MO.0.C 		0.796 0.878
GLI1
M10176_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$GLI1_Q2 		0.796 0.878
GLI1
M10177_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$GLI1_Q3_01 		0.796 0.878
GLI1
M10178_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$GLI1_Q3 		0.796 0.878
GLI1
M10179_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$GLI_Q6 		0.796 0.878
Gli3
M01022_2.00 		Mus musculus
NGACCACCCNN
NNGGGTGGTCN		 PBM
Peterson et al.(2012)
Gli3 		0.779 0.965
Gli3
M08023_2.00 		Mus musculus
RGVCCACCCAS
STGGGTGGBCY		 ChIP-seq
Chen et al.(2011)
GSE11062_Gli3 		0.779 0.965
Gli3
M09512_2.00 		Mus musculus
RGACCACCCASR
YSTGGGTGGTCY		 Misc
Heinz et al.(2010)
Limb-GLI3_GSE11077 		0.779 0.965
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSDARP00000058991 C2H2 ZF 486 511
ENSDARP00000058991 C2H2 ZF 519 546
ENSDARP00000058991 C2H2 ZF 552 576
ENSDARP00000058991 C2H2 ZF 582 607
ENSDARP00000058991 C2H2 ZF 613 638

Links

Other C2H2 ZF family TFs
Other Danio rerio TFs

191 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Aan_R014715 Calypte anna Aan_R014715 I 0.825
ENSMPUG00000018143 Mustela putorius furo ENSMPUG00000018143 I 0.825
ENSFALG00000005113 Ficedula albicollis ENSFALG00000005113 I 0.825
ENSPSIG00000017804 Pelodiscus sinensis ENSPSIG00000017804 I 0.825
GLI3 Otolemur garnettii ENSOGAG00000012651 I 0.825
GLI3 Felis catus ENSFCAG00000011989 I 0.825
ENSPPYG00000017613 Pongo abelii ENSPPYG00000017613 I 0.825
GLI3 Equus caballus ENSECAG00000009281 I 0.825
GLI3 Procavia capensis ENSPCAG00000015092 I 0.825
GLI3 Ornithorhynchus anatinus ENSOANG00000010699 I 0.825
Cmyd_10007839 Chelonia mydas Cmyd_10007839 I 0.825
GLI3 Dasypus novemcinctus ENSDNOG00000049286 I 0.825
Afo_R007816 Aptenodytes forsteri Afo_R007816 I 0.825
Brh_R008256 Buceros rhinoceros Brh_R008256 I 0.825
GLI3 Tursiops truncatus ENSTTRG00000003628 I 0.825
GLI3 Homo sapiens ENSG00000106571 D 0.825
GLI3 Tupaia belangeri ENSTBEG00000006673 I 0.825
GLI3 Gorilla gorilla ENSGGOG00000002026 I 0.825
GLI3 Meleagris gallopavo ENSMGAG00000012277 I 0.825
GLI3 Loxodonta africana ENSLAFG00000008944 I 0.825
ENSMEUG00000013134 Macropus eugenii ENSMEUG00000013134 I 0.825
ENSSHAG00000009727 Sarcophilus harrisii ENSSHAG00000009727 I 0.825
GLI3 Pteropus vampyrus ENSPVAG00000015920 I 0.825
GLI3 Myotis lucifugus ENSMLUG00000015711 I 0.825
GLI3 Monodelphis domestica ENSMODG00000002714 I 0.825
ENSTSYG00000009406 Tarsius syrichta ENSTSYG00000009406 I 0.825
GLI3 Macaca mulatta ENSMMUG00000013614 I 0.825
GLI3 Pan troglodytes ENSPTRG00000019117 I 0.825
ENSGALG00000012329 Gallus gallus ENSGALG00000012329 I 0.825
ENSP00000379258 Macaca fascicularis ENSP00000379258 I 0.825
ENSNLEG00000003160 Nomascus leucogenys ENSNLEG00000003160 I 0.825
GLI3 Choloepus hoffmanni ENSCHOG00000003774 I 0.825
XP_002933449 Xenopus tropicalis XP_002933449 I 0.825
ENSAPLG00000004361 Anas platyrhynchos ENSAPLG00000004361 I 0.825
ENSAMXG00000002477 Astyanax mexicanus ENSAMXG00000002477 I 0.825
Pvit_19093 Pogona vitticeps Pvit_19093 I 0.825
gli3.L Xenopus laevis XB-GENE-865509 I 0.825
ENSCSAG00000015361 Chlorocebus sabaeus ENSCSAG00000015361 I 0.825
GLI3 Canis familiaris ENSCAFG00000003535 I 0.825
ENSAMEG00000008405 Ailuropoda melanoleuca ENSAMEG00000008405 I 0.825
GLI3 Callithrix jacchus ENSCJAG00000007690 I 0.825
ENSPANG00000014545 Papio anubis ENSPANG00000014545 I 0.825
GLI3 Anolis carolinensis ENSACAG00000017547 I 0.825
GLI3 Oryctolagus cuniculus ENSOCUG00000006563 I 0.825
GLI3 Ochotona princeps ENSOPRG00000011225 I 0.825
XP_002933450 Xenopus tropicalis XP_002933450 I 0.825
ENSOARG00000017420 Ovis aries ENSOARG00000017420 I 0.825
Gfo_R007869 Geospiza fortis Gfo_R007869 I 0.825
GLI3 Bos taurus ENSBTAG00000010671 I 0.825
ENSLACG00000017364 Latimeria chalumnae ENSLACG00000017364 I 0.824
Pvit_05813 Pogona vitticeps Pvit_05813 I 0.822
GLI1 Anolis carolinensis ENSACAG00000006541 I 0.822
ENSAMXG00000006646 Astyanax mexicanus ENSAMXG00000006646 I 0.821
ENSAMXG00000003125 Astyanax mexicanus ENSAMXG00000003125 I 0.821
GLI2 Anolis carolinensis ENSACAG00000004133 I 0.821
gli2b Danio rerio ENSDARG00000020884 I 0.821
Ogr02489 Ophisaurus gracilis Ogr02489 I 0.821
Pvit_06470 Pogona vitticeps Pvit_06470 I 0.821
gli2b Takifugu rubripes ENSTRUG00000010444 I 0.821
Tal_R009020 Tyto alba Tal_R009020 I 0.820
Gfo_R013682 Geospiza fortis Gfo_R013682 I 0.820
ENSAPLG00000005128 Anas platyrhynchos ENSAPLG00000005128 I 0.820
ENSAMXG00000017236 Astyanax mexicanus ENSAMXG00000017236 I 0.820
ENSLOCG00000005938 Lepisosteus oculatus ENSLOCG00000005938 I 0.820
GLI2 Meleagris gallopavo ENSMGAG00000011872 I 0.819
ENSPSIG00000008752 Pelodiscus sinensis ENSPSIG00000008752 I 0.819
ENSPFOG00000005116 Poecilia formosa ENSPFOG00000005116 I 0.819
ENSXMAG00000006443 Xiphophorus maculatus ENSXMAG00000006443 I 0.819
Brh_R010932 Buceros rhinoceros Brh_R010932 I 0.819
Afo_R006826 Aptenodytes forsteri Afo_R006826 I 0.819
ENSFALG00000013217 Ficedula albicollis ENSFALG00000013217 I 0.819
Cmyd_10009086 Chelonia mydas Cmyd_10009086 I 0.819
Gfo_R001212 Geospiza fortis Gfo_R001212 I 0.819
ENSAPLG00000015141 Anas platyrhynchos ENSAPLG00000015141 I 0.819
Tal_R006208 Tyto alba Tal_R006208 I 0.819
GLI2 Gallus gallus ENSGALG00000011630 I 0.819
Aan_R003640 Calypte anna Aan_R003640 I 0.819
GLI2 Taeniopygia guttata ENSTGUG00000004599 I 0.819
ENSLOCG00000011983 Lepisosteus oculatus ENSLOCG00000011983 I 0.815
gli2b Tetraodon nigroviridis ENSTNIG00000017828 I 0.812
GLI2 Otolemur garnettii ENSOGAG00000032438 I 0.812
gli1 Danio rerio ENSDARG00000101244 I 0.810
ENSGALG00000014639 Gallus gallus ENSGALG00000014639 I 0.810
gli2b Tetraodon nigroviridis ENSTNIG00000010251 I 0.810
ENSMGAG00000003540 Meleagris gallopavo ENSMGAG00000003540 I 0.810
ENSSHAG00000004233 Sarcophilus harrisii ENSSHAG00000004233 I 0.809
GLI3 Echinops telfairi ENSETEG00000003955 I 0.809
GLI2 Monodelphis domestica ENSMODG00000000245 I 0.809
GLI3 Microcebus murinus ENSMICG00000010785 I 0.809
Myotis_brandtii_Gli2_10019076 Myotis brandtii Myotis_brandtii_Gli2_10019076 I 0.807
ENSP00000390436-D1 Bos grunniens ENSP00000390436-D1 I 0.807
Gli2 Rattus norvegicus ENSRNOG00000007261 I 0.807
ENSSTOG00000004582 Ictidomys tridecemlineatus ENSSTOG00000004582 I 0.807
GLI2 Pan troglodytes ENSPTRG00000012413 I 0.807
ENSPPYG00000012778 Pongo abelii ENSPPYG00000012778 I 0.807
GLI2 Sus scrofa ENSSSCG00000015733 I 0.807
ENSPANG00000024168 Papio anubis ENSPANG00000024168 I 0.807
ENSMMUP00000002494 Macaca fascicularis ENSMMUP00000002494 I 0.807
GLI2 Oryctolagus cuniculus ENSOCUG00000000638 I 0.807
GLI2 Homo sapiens ENSG00000074047 D 0.807
GLI2 Macaca mulatta ENSMMUG00000001868 I 0.807
ENSNLEG00000000944 Nomascus leucogenys ENSNLEG00000000944 I 0.807
ENSMPUG00000000986 Mustela putorius furo ENSMPUG00000000986 I 0.807
GLI2 Canis familiaris ENSCAFG00000004821 I 0.807
Gli2 Mus musculus ENSMUSG00000048402 D 0.807
GLI2 Dasypus novemcinctus ENSDNOG00000008730 I 0.807
GLI2 Bos taurus ENSBTAG00000011682 I 0.807
ENSCSAG00000016668 Chlorocebus sabaeus ENSCSAG00000016668 I 0.807
ENSAMEG00000008708 Ailuropoda melanoleuca ENSAMEG00000008708 I 0.807
GLI2 Cavia porcellus ENSCPOG00000015189 I 0.807
ENSOARG00000013052 Ovis aries ENSOARG00000013052 I 0.807
ENSCJAG00000013342 Callithrix jacchus ENSCJAG00000013342 I 0.807
GLI2 Felis catus ENSFCAG00000014531 I 0.807
GLI2 Procavia capensis ENSPCAG00000001704 I 0.805
GLI2 Gorilla gorilla ENSGGOG00000009653 I 0.803
ENSCSAVG00000009575 Ciona savignyi ENSCSAVG00000009575 I 0.798
GLI1 Echinops telfairi ENSETEG00000006674 I 0.798
ENSCING00000012018 Ciona intestinalis ENSCING00000012018 I 0.798
ENSECAG00000008016 Equus caballus ENSECAG00000008016 I 0.798
GLI2 Tursiops truncatus ENSTTRG00000002058 I 0.798
ENSPFOG00000019294 Poecilia formosa ENSPFOG00000019294 I 0.797
ENSGACG00000004834 Gasterosteus aculeatus ENSGACG00000004834 I 0.797
ENSONIG00000006298 Oreochromis niloticus ENSONIG00000006298 I 0.797
ENSXMAG00000001777 Xiphophorus maculatus ENSXMAG00000001777 I 0.797
gli2b Oryzias latipes ENSORLG00000012490 I 0.797
ENSP00000228682 Macaca fascicularis ENSP00000228682 I 0.796
GLI1 Gorilla gorilla ENSGGOG00000001974 I 0.796
GLI1 Equus caballus ENSECAG00000011246 I 0.796
GLI1 Felis catus ENSFCAG00000002081 I 0.796
ENSCSAG00000004897 Chlorocebus sabaeus ENSCSAG00000004897 I 0.796
GLI1 Otolemur garnettii ENSOGAG00000005219 I 0.796
Gli1 Dipodomys ordii ENSDORG00000007124 I 0.796
GLI1 Homo sapiens ENSG00000111087 D 0.796
GLI1 Dasypus novemcinctus ENSDNOG00000017512 I 0.796
ENSSTOG00000020366 Ictidomys tridecemlineatus ENSSTOG00000020366 I 0.796
ENSBTAP00000008704-D1 Bos grunniens ENSBTAP00000008704-D1 I 0.796
GLI1 Tursiops truncatus ENSTTRG00000013086 I 0.796
GLI1 Myotis lucifugus ENSMLUG00000001013 I 0.796
ENSPANG00000017044 Papio anubis ENSPANG00000017044 I 0.796
ENSNLEG00000017337 Nomascus leucogenys ENSNLEG00000017337 I 0.796
GLI1 Canis familiaris ENSCAFG00000000223 I 0.796
ENSPPYG00000004689 Pongo abelii ENSPPYG00000004689 I 0.796
ENSOARG00000006674 Ovis aries ENSOARG00000006674 I 0.796
GLI1 Ochotona princeps ENSOPRG00000006483 I 0.796
GLI1 Oryctolagus cuniculus ENSOCUG00000011128 I 0.796
ENSAMEG00000004878 Ailuropoda melanoleuca ENSAMEG00000004878 I 0.796
GLI1 Bos taurus ENSBTAG00000006631 I 0.796
Gli1 Mus musculus ENSMUSG00000025407 D 0.796
GLI1 Callithrix jacchus ENSCJAG00000007324 I 0.796
Gli1 Rattus norvegicus ENSRNOG00000025120 I 0.796
Myotis_brandtii_GLI1_10018379 Myotis brandtii Myotis_brandtii_GLI1_10018379 I 0.796
ENSSHAG00000006652 Sarcophilus harrisii ENSSHAG00000006652 I 0.796
GLI1 Loxodonta africana ENSLAFG00000022910 I 0.796
ENSMEUG00000009702 Macropus eugenii ENSMEUG00000009702 I 0.796
GLI1 Pteropus vampyrus ENSPVAG00000012109 I 0.796
ENSMPUG00000001825 Mustela putorius furo ENSMPUG00000001825 I 0.796
GLI1 Pan troglodytes ENSPTRG00000005133 I 0.796
GLI1 Macaca mulatta ENSMMUG00000022058 I 0.796
GLI1 Cavia porcellus ENSCPOG00000005414 I 0.796
gli2b Tetraodon nigroviridis ENSTNIG00000013668 I 0.795
gli2b Takifugu rubripes ENSTRUG00000007692 I 0.795
GLI1 Procavia capensis ENSPCAG00000015756 I 0.783
ENSSTOG00000020844 Ictidomys tridecemlineatus ENSSTOG00000020844 I 0.779
Gli3 Mus musculus ENSMUSG00000021318 D 0.779
ENSTGUG00000001834 Taeniopygia guttata ENSTGUG00000001834 I 0.779
GLI3 Cavia porcellus ENSCPOG00000013233 I 0.779
Gli3 Rattus norvegicus ENSRNOG00000014395 I 0.779
HelroG111329 Helobdella robusta HelroG111329 I 0.777
ENSGMOG00000007975 Gadus morhua ENSGMOG00000007975 I 0.776
gli1 Takifugu rubripes ENSTRUG00000014998 I 0.776
gli1 Gasterosteus aculeatus ENSGACG00000006458 I 0.776
ENSLOCG00000002028 Lepisosteus oculatus ENSLOCG00000002028 I 0.775
gli1 Xenopus tropicalis XB-GENE-482644 I 0.775
gli1.S Xenopus laevis XB-GENE-864895 I 0.775
ENSONIG00000004472 Oreochromis niloticus ENSONIG00000004472 I 0.775
ENSPFOG00000006269 Poecilia formosa ENSPFOG00000006269 I 0.774
ENSONIG00000005084 Oreochromis niloticus ENSONIG00000005084 I 0.774
gli1 Oryzias latipes ENSORLG00000005455 I 0.774
ENSXMAG00000017965 Xiphophorus maculatus ENSXMAG00000017965 I 0.774
ENSONIG00000003608 Oreochromis niloticus ENSONIG00000003608 I 0.773
ENSPFOG00000014778 Poecilia formosa ENSPFOG00000014778 I 0.773
gli1 Tetraodon nigroviridis ENSTNIG00000007058 I 0.773
ENSGMOG00000010335 Gadus morhua ENSGMOG00000010335 I 0.773
gli2a Danio rerio ENSDARG00000025641 I 0.771
gli2.S Xenopus laevis XB-GENE-6251939 I 0.771
ENSCJAG00000003076 Callithrix jacchus ENSCJAG00000003076 I 0.769
gli2.L Xenopus laevis XB-GENE-17342592 I 0.767
fgenesh2_pg.scaffold_169000072 Branchiostoma floridae fgenesh2_pg.scaffold_169000072 I 0.767
fgenesh2_pg.scaffold_137000068 Branchiostoma floridae fgenesh2_pg.scaffold_137000068 I 0.767
gli2b Gasterosteus aculeatus ENSGACG00000001547 I 0.766
gli2b Takifugu rubripes ENSTRUG00000001954 I 0.766